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1 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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2 "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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3 <html xmlns="http://www.w3.org/1999/xhtml">
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4 <head>
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5 <meta http-equiv="Content-type" content="text/html; charset=UTF-8" />
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6 <link rel="stylesheet" href="/static/style/base.css" type="text/css" />
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7 <title>Phylogenetic tree Galaxy Composite Dataset</title>
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8 </head>
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9 <body>
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10 <div class="document">
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11 Output completed: 2012-04-03 01:57:44 PM
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12 <p/>
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13 <div id="gd_outputs">
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14 Outputs
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15 <ul>
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16 <li><a href="tree.pdf">tree.pdf</a></li>
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17 <li><a href="phylogenetic_tree.newick">phylogenetic tree (newick)</a></li>
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18 <li><a href="distance_matrix.phylip">Phylip distance matrix</a></li>
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19 <li><a href="mega_distance_matrix.txt">Mega distance matrix</a></li>
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20 <li><a href="informative_snps.txt">informative SNPs</a></li>
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21 </ul>
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22 </div>
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23 <div id="gd_inputs">
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24 Inputs
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25 <ul>
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26 <li>Minimum coverage: 3</li>
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27 <li>Minimum quality: 30</li>
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28 <li>Include reference sequence: yes</li>
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29 <li>Data source: sequence coverage</li>
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30 <li>Branch type: square</li>
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31 <li>Draw branches to scale: yes</li>
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32 <li>Show branch lengths: yes</li>
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33 <li>Tree layout: horizontal</li>
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34 </ul>
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35 </div>
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36 <div id="gd_misc">
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37 Individuals
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38 <ol>
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39 <li>PB1</li>
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40 <li>PB2</li>
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41 <li>PB3</li>
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42 <li>PB4</li>
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43 <li>PB6</li>
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44 <li>PB8</li>
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45 </ol>
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46 </div>
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47 </div>
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48 </body>
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49 </html>
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