Mercurial > repos > miller-lab > genome_diversity
comparison test-data/test_out/phylogenetic_tree/phylogenetic_tree.html @ 0:2c498d40ecde
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| author | miller-lab |
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| date | Mon, 09 Apr 2012 12:03:06 -0400 |
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| -1:000000000000 | 0:2c498d40ecde |
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| 1 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" | |
| 2 "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> | |
| 3 <html xmlns="http://www.w3.org/1999/xhtml"> | |
| 4 <head> | |
| 5 <meta http-equiv="Content-type" content="text/html; charset=UTF-8" /> | |
| 6 <link rel="stylesheet" href="/static/style/base.css" type="text/css" /> | |
| 7 <title>Phylogenetic tree Galaxy Composite Dataset</title> | |
| 8 </head> | |
| 9 <body> | |
| 10 <div class="document"> | |
| 11 Output completed: 2012-04-03 01:57:44 PM | |
| 12 <p/> | |
| 13 <div id="gd_outputs"> | |
| 14 Outputs | |
| 15 <ul> | |
| 16 <li><a href="tree.pdf">tree.pdf</a></li> | |
| 17 <li><a href="phylogenetic_tree.newick">phylogenetic tree (newick)</a></li> | |
| 18 <li><a href="distance_matrix.phylip">Phylip distance matrix</a></li> | |
| 19 <li><a href="mega_distance_matrix.txt">Mega distance matrix</a></li> | |
| 20 <li><a href="informative_snps.txt">informative SNPs</a></li> | |
| 21 </ul> | |
| 22 </div> | |
| 23 <div id="gd_inputs"> | |
| 24 Inputs | |
| 25 <ul> | |
| 26 <li>Minimum coverage: 3</li> | |
| 27 <li>Minimum quality: 30</li> | |
| 28 <li>Include reference sequence: yes</li> | |
| 29 <li>Data source: sequence coverage</li> | |
| 30 <li>Branch type: square</li> | |
| 31 <li>Draw branches to scale: yes</li> | |
| 32 <li>Show branch lengths: yes</li> | |
| 33 <li>Tree layout: horizontal</li> | |
| 34 </ul> | |
| 35 </div> | |
| 36 <div id="gd_misc"> | |
| 37 Individuals | |
| 38 <ol> | |
| 39 <li>PB1</li> | |
| 40 <li>PB2</li> | |
| 41 <li>PB3</li> | |
| 42 <li>PB4</li> | |
| 43 <li>PB6</li> | |
| 44 <li>PB8</li> | |
| 45 </ol> | |
| 46 </div> | |
| 47 </div> | |
| 48 </body> | |
| 49 </html> |