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comparison dpmix.xml @ 26:91e835060ad2

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Updates to Admixture, Aggregate Individuals, and Restore Attributes to support gd_genotype
author Richard Burhans <burhans@bx.psu.edu>
date Mon, 03 Jun 2013 12:29:29 -0400
parents cba0d7a63b82
children 8997f2ca8c7a
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25:cba0d7a63b82 26:91e835060ad2
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41 <param name="ap1_input" type="data" format="gd_indivs" label="Ancestral population 1 individuals" /> 41 <param name="ap1_input" type="data" format="gd_indivs" label="Ancestral population 1 individuals" />
42 <param name="ap2_input" type="data" format="gd_indivs" label="Ancestral population 2 individuals" /> 42 <param name="ap2_input" type="data" format="gd_indivs" label="Ancestral population 2 individuals" />
43 <param name="p_input" type="data" format="gd_indivs" label="Potentially admixed individuals" /> 43 <param name="p_input" type="data" format="gd_indivs" label="Potentially admixed individuals" />
44 44
45 <param name="switch_penalty" type="float" min="0" value="10" label="Genotype switch penalty" help="Note: typically between 10 and 100."/> 45 <param name="switch_penalty" type="float" min="0" value="10" label="Genotype switch penalty" help="Note: Depends on the density of SNPs. For instance, with 50,000 SNPs in a vertebrate genome, 1.0 might be appropriate, with millions of SNPs, a value between 10 and 100 might be reasonable."/>
46 </inputs> 46 </inputs>
47 47
48 <outputs> 48 <outputs>
49 <data name="output" format="tabular" /> 49 <data name="output" format="tabular" />
50 <data name="output2" format="html" /> 50 <data name="output2" format="html" />