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comparison README @ 22:95a05c1ef5d5

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update to devshed revision aaece207bd01
author Richard Burhans <burhans@bx.psu.edu>
date Mon, 11 Mar 2013 11:28:06 -0400
parents 4b6590dd7250
children a631c2f6d913
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21:d6b961721037 22:95a05c1ef5d5
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4 Additionally, you'll need the following python modules: 4 Additionally, you'll need the following python modules:
5 matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/ 5 matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/
6 mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/ 6 mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/
7 networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/ 7 networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/
8 fisher (we used version 0.1.4) http://pypi.python.org/packages/source/f/fisher/
8 9
9 And the following software: 10 And the following software:
10 ADMIXTURE (we used version 1.22) http://www.genetics.ucla.edu/software/admixture/ 11 ADMIXTURE (we used version 1.22) http://www.genetics.ucla.edu/software/admixture/
11 EIGENSOFT (we used version 3.0) http://genepath.med.harvard.edu/~reich/Software.htm 12 EIGENSOFT (we used version 3.0) http://genepath.med.harvard.edu/~reich/Software.htm
12 PHAST (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/ 13 PHAST (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/
13 QuickTree (we used version 1.1) http://www.sanger.ac.uk/resources/software/quicktree/ 14 QuickTree (we used version 1.1) http://www.sanger.ac.uk/resources/software/quicktree/
15
16 Images used in the tools' documentation are located in the static/images
17 directory. Please copy these to the static/images directory in your
18 Galaxy installation.