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comparison aggregate_gd_indivs.xml @ 22:95a05c1ef5d5

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update to devshed revision aaece207bd01
author Richard Burhans <burhans@bx.psu.edu>
date Mon, 11 Mar 2013 11:28:06 -0400
parents f04f40a36cc8
children 91e835060ad2
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21:d6b961721037 22:95a05c1ef5d5
1 <tool id="gd_sum_gd_snp" name="Aggregate Individuals" version="1.0.0"> 1 <tool id="gd_sum_gd_snp" name="Aggregate Individuals" version="1.0.0">
2 <description>: Append summary columns for a population</description> 2 <description>: Append summary columns for a population</description>
3 3
4 <command interpreter="python"> 4 <command interpreter="python">
5 modify_snp_table.py "$input" "$p1_input" "$output" "-1" "-1" "-1" "-1" 5 aggregate_gd_indivs.py "$input" "$p1_input" "$output"
6 #for $individual, $individual_col in zip($input.dataset.metadata.individual_names, $input.dataset.metadata.individual_columns) 6 #for $individual, $individual_col in zip($input.dataset.metadata.individual_names, $input.dataset.metadata.individual_columns)
7 #set $arg = '%s:%s' % ($individual_col, $individual) 7 #set $arg = '%s:%s' % ($individual_col, $individual)
8 "$arg" 8 "$arg"
9 #end for 9 #end for
10 </command> 10 </command>