Mercurial > repos > miller-lab > genome_diversity

comparison dpmix.xml @ 10:9b92372de9f6

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rename snp to gsSnp, sap to gdSap
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 04 Sep 2012 12:49:53 -0400
parents e29f4d801bb0
children
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9:22fe0154fa54 10:9b92372de9f6
8 "$arg" 8 "$arg"
9 #end for 9 #end for
10 </command> 10 </command>
11 11
12 <inputs> 12 <inputs>
13 <param name="input" type="data" format="snp" label="Dataset"> 13 <param name="input" type="data" format="gdSnp" label="Dataset">
14 <validator type="unspecified_build" message="This dataset does not have a reference species and cannot be used with this tool" /> 14 <validator type="unspecified_build" message="This dataset does not have a reference species and cannot be used with this tool" />
15 </param> 15 </param>
16 <param name="ap1_input" type="data" format="ind" label="Ancestral population 1 individuals" /> 16 <param name="ap1_input" type="data" format="ind" label="Ancestral population 1 individuals" />
17 <param name="ap2_input" type="data" format="ind" label="Ancestral population 2 individuals" /> 17 <param name="ap2_input" type="data" format="ind" label="Ancestral population 2 individuals" />
18 <param name="p_input" type="data" format="ind" label="Potentially admixed individuals" /> 18 <param name="p_input" type="data" format="ind" label="Potentially admixed individuals" />
30 <data name="output2" format="html" /> 30 <data name="output2" format="html" />
31 </outputs> 31 </outputs>
32 32
33 <tests> 33 <tests>
34 <test> 34 <test>
35 <param name="input" value="test_in/sample.snp" ftype="snp" /> 35 <param name="input" value="test_in/sample.gdSnp" ftype="gdSnp" />
36 <param name="ap1_input" value="test_in/a.ind" ftype="ind" /> 36 <param name="ap1_input" value="test_in/a.ind" ftype="ind" />
37 <param name="ap2_input" value="test_in/b.ind" ftype="ind" /> 37 <param name="ap2_input" value="test_in/b.ind" ftype="ind" />
38 <param name="p_input" value="test_in/c.ind" ftype="ind" /> 38 <param name="p_input" value="test_in/c.ind" ftype="ind" />
39 <param name="data_source" value="0" /> 39 <param name="data_source" value="0" />
40 <param name="switch_penalty" value="10" /> 40 <param name="switch_penalty" value="10" />