Mercurial > repos > miller-lab > genome_diversity
comparison pathway_image.xml @ 10:9b92372de9f6
rename snp to gsSnp, sap to gdSap
| author | Richard Burhans <burhans@bx.psu.edu> |
|---|---|
| date | Tue, 04 Sep 2012 12:49:53 -0400 |
| parents | e29f4d801bb0 |
| children |
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| 9:22fe0154fa54 | 10:9b92372de9f6 |
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| 9 "--posKEGGclmn=${input.metadata.kegg_path}" | 9 "--posKEGGclmn=${input.metadata.kegg_path}" |
| 10 "--KEGGgeneposcolmn=${input.metadata.kegg_gene}" | 10 "--KEGGgeneposcolmn=${input.metadata.kegg_gene}" |
| 11 </command> | 11 </command> |
| 12 | 12 |
| 13 <inputs> | 13 <inputs> |
| 14 <param name="input" type="data" format="sap" label="Table"> | 14 <param name="input" type="data" format="gdSap" label="Table"> |
| 15 <validator type="metadata" check="kegg_gene,kegg_path" message="Missing KEGG gene code column and/or KEGG pathway code/name column metadata. Click the pencil icon in the history item to edit/save the metadata attributes" /> | 15 <validator type="metadata" check="kegg_gene,kegg_path" message="Missing KEGG gene code column and/or KEGG pathway code/name column metadata. Click the pencil icon in the history item to edit/save the metadata attributes" /> |
| 16 </param> | 16 </param> |
| 17 <param name="pathway" type="select"> | 17 <param name="pathway" type="select"> |
| 18 <options from_file="gd.pathways.txt"> | 18 <options from_file="gd.pathways.txt"> |
| 19 <column name="value" index="1"/> | 19 <column name="value" index="1"/> |
| 27 <data name="output" format="png" /> | 27 <data name="output" format="png" /> |
| 28 </outputs> | 28 </outputs> |
| 29 | 29 |
| 30 <tests> | 30 <tests> |
| 31 <test> | 31 <test> |
| 32 <param name="input" value="test_in/sample.sap" ftype="sap" /> | 32 <param name="input" value="test_in/sample.gdSap" ftype="gdSap" /> |
| 33 <param name="pathway" value="cfa05214" /> | 33 <param name="pathway" value="cfa05214" /> |
| 34 <output name="output" file="test_out/pathway_image/pathway_image.png" compare="sim_size" delta = "10000" /> | 34 <output name="output" file="test_out/pathway_image/pathway_image.png" compare="sim_size" delta = "10000" /> |
| 35 </test> | 35 </test> |
| 36 </tests> | 36 </tests> |
| 37 | 37 |