Mercurial > repos > miller-lab > genome_diversity

comparison lib/galaxy/datatypes/wsf.py @ 7:e29f4d801bb0

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change wsf -> snp; wpf -> sap
author Richard Burhans <burhans@bx.psu.edu>
date Wed, 18 Apr 2012 11:12:21 -0400
parents 41ef7e57c2fa
children 9b92372de9f6
comparison
equal deleted inserted replaced
6:626b714f72bb 7:e29f4d801bb0
139 if isinstance( value_from_comment_metadata, basestring ): 139 if isinstance( value_from_comment_metadata, basestring ):
140 dataset.metadata.dbkey = value_from_comment_metadata 140 dataset.metadata.dbkey = value_from_comment_metadata
141 141
142 class SnpFile( Fake ): 142 class SnpFile( Fake ):
143 """ Webb's SNP file format """ 143 """ Webb's SNP file format """
144 file_ext = 'wsf' 144 file_ext = 'snp'
145 145
146 MetadataElement( name="individual_names", desc="individual names", visible=False, readonly=True ) 146 MetadataElement( name="individual_names", desc="individual names", visible=False, readonly=True )
147 MetadataElement( name="individual_columns", desc="individual columns", visible=False, readonly=True ) 147 MetadataElement( name="individual_columns", desc="individual columns", visible=False, readonly=True )
148 148
149 def set_dataset_metadata_from_comments( self, dataset ): 149 def set_dataset_metadata_from_comments( self, dataset ):
176 dataset.metadata.individual_names = individual_names[:] 176 dataset.metadata.individual_names = individual_names[:]
177 dataset.metadata.individual_columns = individual_columns[:] 177 dataset.metadata.individual_columns = individual_columns[:]
178 178
179 class SapFile( Fake ): 179 class SapFile( Fake ):
180 """ Webb's SAP file format """ 180 """ Webb's SAP file format """
181 file_ext = 'wpf' 181 file_ext = 'sap'
182 182
183 MetadataElement( name="kegg_gene", desc="KEGG gene code column", param=metadata.ColumnParameter, default=0 ) 183 MetadataElement( name="kegg_gene", desc="KEGG gene code column", param=metadata.ColumnParameter, default=0 )
184 MetadataElement( name="kegg_path", desc="KEGG pathway code/name column", param=metadata.ColumnParameter, default=0 ) 184 MetadataElement( name="kegg_path", desc="KEGG pathway code/name column", param=metadata.ColumnParameter, default=0 )
185 185