diff diversity_pi.xml @ 24:248b06e86022

Added gd_genotype datatype. Modified tools to support new datatype.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/diversity_pi.xml	Tue May 28 16:24:19 2013 -0400
@@ -0,0 +1,25 @@
+<tool id="gd_diversity_pi" name="Diversity" version="1.0.0">
+  <description>&amp;pi;</description>
+
+  <command interpreter="python">
+    diversity_pi.py "$input" "$coverage_input" "$indiv_input" "$min_coverage" "$output"
+    #for $individual, $individual_col in zip($input.dataset.metadata.individual_names, $input.dataset.metadata.individual_columns)
+        #set $arg = '%s:%s' % ($individual_col, $individual)
+        "$arg"
+    #end for
+  </command>
+
+  <inputs>
+    <param name="input" type="data" format="gd_snp" label="SNP dataset" />
+    <param name="coverage_input" type="data" format="interval" label="Coverage dataset" />
+    <param name="indiv_input" type="data" format="gd_indivs" label="Population Individuals" />
+    <param name="min_coverage" type="integer" min="1" value="1" label="Minimum coverage" />
+  </inputs>
+
+  <outputs>
+    <data name="output" format="txt" metadata_source="input" />
+  </outputs>
+
+  <help>
+  </help>
+</tool>