Mercurial > repos > miller-lab > genome_diversity

diff evaluate_population_numbers.bash @ 0:2c498d40ecde

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author miller-lab
date Mon, 09 Apr 2012 12:03:06 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/evaluate_population_numbers.bash	Mon Apr 09 12:03:06 2012 -0400
@@ -0,0 +1,17 @@
+#!/usr/bin/env bash
+
+if [ $# -ne 3 ]; then
+    echo "usage"
+    exit 1
+fi
+
+input_ped_file="$1"
+output_file="$2"
+max_populations="$3"
+
+ADMIXTURE=admixture
+
+for (( i=1; $i <= $max_populations; i++ )); do
+    $ADMIXTURE --cv "$input_ped_file" $i 2>&1 | grep CV >> "$output_file"
+done
+