Mercurial > repos > miller-lab > genome_diversity

diff phylogenetic_tree.xml @ 4:7a94f11fe71f

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change output.extra_files_path to output.files_path
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 10 Apr 2012 11:58:44 -0400
parents 2c498d40ecde
children e29f4d801bb0
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--- a/phylogenetic_tree.xml	Mon Apr 09 16:51:28 2012 -0400
+++ b/phylogenetic_tree.xml	Tue Apr 10 11:58:44 2012 -0400
@@ -8,7 +8,7 @@
     #else if $individuals.choice == '1'
       "$p1_input"
     #end if
-    "$output" "$output.extra_files_path" "$minimum_coverage" "$minimum_quality"
+    "$output" "$output.files_path" "$minimum_coverage" "$minimum_quality"
 	#if ((str($input.metadata.scaffold) == str($input.metadata.ref)) and (str($input.metadata.pos) == str($input.metadata.rPos))) or (str($include_reference) == '0')
         "none"
     #else