Mercurial > repos > miller-lab > genome_diversity

diff make_phylip.xml @ 37:884ccb07885b

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Fixed output_id
author Richard Burhans <burhans@bx.psu.edu>
date Wed, 20 Nov 2013 16:43:43 -0500
parents 51cd0307fb70
children
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--- a/make_phylip.xml	Wed Nov 20 16:32:01 2013 -0500
+++ b/make_phylip.xml	Wed Nov 20 16:43:43 2013 -0500
@@ -7,7 +7,7 @@
     #set $gen_posClmn = int($input.metadata.rPos) - $zero_based
     #set $gen_refClmn = int($input.metadata.pos) - $zero_based + 1
     #set $gen_altrClmn = int($input.metadata.pos) - $zero_based + 2
-    make_phylip.py '--altrClmn=$gen_altrClmn' '--chrClmn=$gen_chrClmn' '--gd_indivs=$indivs_input' '--input=$input' '--input_type=$input.ext' '--output=$output1' '--posClmn=$gen_posClmn' '--refClmn=$gen_refClmn'
+    make_phylip.py '--altrClmn=$gen_altrClmn' '--chrClmn=$gen_chrClmn' '--gd_indivs=$indivs_input' '--input=$input' '--input_type=$input.ext' '--output=$output1' '--output_id=$output1.id' '--posClmn=$gen_posClmn' '--refClmn=$gen_refClmn'
     #if $input_type.choice == '0'
       #set $cov_chrClmn = int($input_type.coverage_input.metadata.ref) - $zero_based
       #set $cov_posClmn = int($input_type.coverage_input.metadata.rPos) - $zero_based