Mercurial > repos > miller-lab > genome_diversity

diff modify_snp_table.xml @ 10:9b92372de9f6

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rename snp to gsSnp, sap to gdSap
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 04 Sep 2012 12:49:53 -0400
parents e29f4d801bb0
children
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--- a/modify_snp_table.xml	Tue Jul 10 11:41:22 2012 -0400
+++ b/modify_snp_table.xml	Tue Sep 04 12:49:53 2012 -0400
@@ -15,7 +15,7 @@
   </command>
 
   <inputs>
-    <param name="input" type="data" format="snp" label="SNP table" />
+    <param name="input" type="data" format="gdSnp" label="SNP table" />
     <param name="p1_input" type="data" format="ind" label="Population individuals" />
     <conditional name="limit_coverage">
       <param name="choice" type="select" format="integer" label="Option">
@@ -33,19 +33,19 @@
   </inputs>
 
   <outputs>
-    <data name="output" format="snp" metadata_source="input" />
+    <data name="output" format="gdSnp" metadata_source="input" />
   </outputs>
 
   <tests>
     <test>
-      <param name="input" value="test_in/sample.snp" ftype="snp" />
+      <param name="input" value="test_in/sample.gdSnp" ftype="gdSnp" />
       <param name="p1_input" value="test_in/a.ind" ftype="ind" />
       <param name="choice" value="1" />
       <param name="lo_coverage" value="0" />
       <param name="hi_coverage" value="1000" />
       <param name="low_ind_cov" value="3" />
       <param name="lo_quality" value="30" />
-      <output name="output" file="test_out/modify_snp_table/modify.snp" />
+      <output name="output" file="test_out/modify_snp_table/modify.gdSnp" />
     </test>
   </tests>