Mercurial > repos > miller-lab > genome_diversity

diff prepare_population_structure.xml @ 10:9b92372de9f6

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rename snp to gsSnp, sap to gdSap
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 04 Sep 2012 12:49:53 -0400
parents e29f4d801bb0
children
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--- a/prepare_population_structure.xml	Tue Jul 10 11:41:22 2012 -0400
+++ b/prepare_population_structure.xml	Tue Sep 04 12:49:53 2012 -0400
@@ -18,7 +18,7 @@
   </command>
 
   <inputs>
-    <param name="input" type="data" format="snp" label="SNP table" />
+    <param name="input" type="data" format="gdSnp" label="SNP table" />
     <param name="min_reads" type="integer" min="0" value="0" label="Minimum reads covering a SNP, per individual" />
     <param name="min_qual" type="integer" min="0" value="0" label="Minimum quality value, per individual" />
     <param name="min_spacing" type="integer" min="0" value="0" label="Minimum spacing between SNPs on the same scaffold" />
@@ -46,7 +46,7 @@
 
   <tests>
     <test>
-      <param name="input" value="test_in/sample.snp" ftype="snp" />
+      <param name="input" value="test_in/sample.gdSnp" ftype="gdSnp" />
       <param name="min_reads" value="3" />
       <param name="min_qual" value="30" />
       <param name="min_spacing" value="0" />