Mercurial > repos > miller-lab > genome_diversity

diff rank_pathways.xml @ 10:9b92372de9f6

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rename snp to gsSnp, sap to gdSap
author Richard Burhans <burhans@bx.psu.edu>
date Tue, 04 Sep 2012 12:49:53 -0400
parents e29f4d801bb0
children
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--- a/rank_pathways.xml	Tue Jul 10 11:41:22 2012 -0400
+++ b/rank_pathways.xml	Tue Sep 04 12:49:53 2012 -0400
@@ -16,7 +16,7 @@
   </command>
 
   <inputs>
-    <param name="input" type="data" format="sap" label="Table">
+    <param name="input" type="data" format="gdSap" label="Table">
         <validator type="metadata" check="kegg_gene,kegg_path" message="Missing KEGG gene code column and/or KEGG pathway code/name column metadata.  Click the pencil icon in the history item to edit/save the metadata attributes" />
     </param>
     <param name="output_format" type="select" label="Output format">
@@ -31,7 +31,7 @@
 
   <tests>
     <test>
-      <param name="input" value="test_in/sample.sap" ftype="sap" />
+      <param name="input" value="test_in/sample.gdSap" ftype="gdSap" />
       <param name="output_format" value="a" />
       <output name="output" file="test_out/rank_pathways/rank_pathways.tabular" />
     </test>