Mercurial > repos > miller-lab > genome_diversity

diff rank_pathways.xml @ 31:a631c2f6d913

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Update to Miller Lab devshed revision 3c4110ffacc3
author Richard Burhans <burhans@bx.psu.edu>
date Fri, 20 Sep 2013 13:25:27 -0400
parents 184d14e4270d
children
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--- a/rank_pathways.xml	Fri Jul 26 12:51:13 2013 -0400
+++ b/rank_pathways.xml	Fri Sep 20 13:25:27 2013 -0400
@@ -53,6 +53,13 @@
     <data name="output" format="tabular" />
   </outputs>
 
+  <requirements>
+    <requirement type="package" version="0.2.5">mechanize</requirement>
+    <requirement type="package" version="1.8.1">networkx</requirement>
+    <requirement type="package" version="0.1.4">fisher</requirement>
+  </requirements>
+
+
   <tests>
     <test>
     </test>
@@ -64,7 +71,7 @@
 
 The query dataset has a column containing ENSEMBL transcript codes for
 the gene set of interest, while the background dataset has one column
-with ENSEMBL transcript codes and another with GO terms, for some larger
+with ENSEMBL transcript codes and another with KEGG pathways, for some larger
 universe of genes.
 
 All of the input and output datasets are in tabular_ format.  The input