Mercurial > repos > miller-lab > genome_diversity

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    <title>Phylogenetic tree Galaxy Composite Dataset</title>
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      Output completed: 2012-04-03 01:57:44 PM
      <p/>
      <div id="gd_outputs">
        Outputs
        <ul>
            <li><a href="tree.pdf">tree.pdf</a></li>
            <li><a href="phylogenetic_tree.newick">phylogenetic tree (newick)</a></li>
            <li><a href="distance_matrix.phylip">Phylip distance matrix</a></li>
            <li><a href="mega_distance_matrix.txt">Mega distance matrix</a></li>
            <li><a href="informative_snps.txt">informative SNPs</a></li>
        </ul>
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        Inputs
        <ul>
            <li>Minimum coverage: 3</li>
            <li>Minimum quality: 30</li>
            <li>Include reference sequence: yes</li>
            <li>Data source: sequence coverage</li>
            <li>Branch type: square</li>
            <li>Draw branches to scale: yes</li>
            <li>Show branch lengths: yes</li>
            <li>Tree layout: horizontal</li>
        </ul>
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        Individuals
<ol>
<li>PB1</li>
<li>PB2</li>
<li>PB3</li>
<li>PB4</li>
<li>PB6</li>
<li>PB8</li>
</ol>
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author	Richard Burhans <burhans@bx.psu.edu>
date	Wed, 20 Nov 2013 16:43:43 -0500
parents	2c498d40ecde
children