Mercurial > repos > miller-lab > genome_diversity
view OrderedDict.py @ 14:8ae67e9fb6ff
Uploaded Miller Lab Devshed version a51c894f5bed again [possible toolshed.g2 bug]
author | miller-lab |
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date | Fri, 28 Sep 2012 11:35:56 -0400 |
parents | 2c498d40ecde |
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# http://code.activestate.com/recipes/576693/ # Backport of OrderedDict() class that runs on Python 2.4, 2.5, 2.6, 2.7 and pypy. # Passes Python2.7's test suite and incorporates all the latest updates. try: from thread import get_ident as _get_ident except ImportError: from dummy_thread import get_ident as _get_ident try: from _abcoll import KeysView, ValuesView, ItemsView except ImportError: pass class OrderedDict(dict): 'Dictionary that remembers insertion order' # An inherited dict maps keys to values. # The inherited dict provides __getitem__, __len__, __contains__, and get. # The remaining methods are order-aware. # Big-O running times for all methods are the same as for regular dictionaries. # The internal self.__map dictionary maps keys to links in a doubly linked list. # The circular doubly linked list starts and ends with a sentinel element. # The sentinel element never gets deleted (this simplifies the algorithm). # Each link is stored as a list of length three: [PREV, NEXT, KEY]. def __init__(self, *args, **kwds): '''Initialize an ordered dictionary. Signature is the same as for regular dictionaries, but keyword arguments are not recommended because their insertion order is arbitrary. ''' if len(args) > 1: raise TypeError('expected at most 1 arguments, got %d' % len(args)) try: self.__root except AttributeError: self.__root = root = [] # sentinel node root[:] = [root, root, None] self.__map = {} self.__update(*args, **kwds) def __setitem__(self, key, value, dict_setitem=dict.__setitem__): 'od.__setitem__(i, y) <==> od[i]=y' # Setting a new item creates a new link which goes at the end of the linked # list, and the inherited dictionary is updated with the new key/value pair. if key not in self: root = self.__root last = root[0] last[1] = root[0] = self.__map[key] = [last, root, key] dict_setitem(self, key, value) def __delitem__(self, key, dict_delitem=dict.__delitem__): 'od.__delitem__(y) <==> del od[y]' # Deleting an existing item uses self.__map to find the link which is # then removed by updating the links in the predecessor and successor nodes. dict_delitem(self, key) link_prev, link_next, key = self.__map.pop(key) link_prev[1] = link_next link_next[0] = link_prev def __iter__(self): 'od.__iter__() <==> iter(od)' root = self.__root curr = root[1] while curr is not root: yield curr[2] curr = curr[1] def __reversed__(self): 'od.__reversed__() <==> reversed(od)' root = self.__root curr = root[0] while curr is not root: yield curr[2] curr = curr[0] def clear(self): 'od.clear() -> None. Remove all items from od.' try: for node in self.__map.itervalues(): del node[:] root = self.__root root[:] = [root, root, None] self.__map.clear() except AttributeError: pass dict.clear(self) def popitem(self, last=True): '''od.popitem() -> (k, v), return and remove a (key, value) pair. Pairs are returned in LIFO order if last is true or FIFO order if false. ''' if not self: raise KeyError('dictionary is empty') root = self.__root if last: link = root[0] link_prev = link[0] link_prev[1] = root root[0] = link_prev else: link = root[1] link_next = link[1] root[1] = link_next link_next[0] = root key = link[2] del self.__map[key] value = dict.pop(self, key) return key, value # -- the following methods do not depend on the internal structure -- def keys(self): 'od.keys() -> list of keys in od' return list(self) def values(self): 'od.values() -> list of values in od' return [self[key] for key in self] def items(self): 'od.items() -> list of (key, value) pairs in od' return [(key, self[key]) for key in self] def iterkeys(self): 'od.iterkeys() -> an iterator over the keys in od' return iter(self) def itervalues(self): 'od.itervalues -> an iterator over the values in od' for k in self: yield self[k] def iteritems(self): 'od.iteritems -> an iterator over the (key, value) items in od' for k in self: yield (k, self[k]) def update(*args, **kwds): '''od.update(E, **F) -> None. Update od from dict/iterable E and F. If E is a dict instance, does: for k in E: od[k] = E[k] If E has a .keys() method, does: for k in E.keys(): od[k] = E[k] Or if E is an iterable of items, does: for k, v in E: od[k] = v In either case, this is followed by: for k, v in F.items(): od[k] = v ''' if len(args) > 2: raise TypeError('update() takes at most 2 positional ' 'arguments (%d given)' % (len(args),)) elif not args: raise TypeError('update() takes at least 1 argument (0 given)') self = args[0] # Make progressively weaker assumptions about "other" other = () if len(args) == 2: other = args[1] if isinstance(other, dict): for key in other: self[key] = other[key] elif hasattr(other, 'keys'): for key in other.keys(): self[key] = other[key] else: for key, value in other: self[key] = value for key, value in kwds.items(): self[key] = value __update = update # let subclasses override update without breaking __init__ __marker = object() def pop(self, key, default=__marker): '''od.pop(k[,d]) -> v, remove specified key and return the corresponding value. If key is not found, d is returned if given, otherwise KeyError is raised. ''' if key in self: result = self[key] del self[key] return result if default is self.__marker: raise KeyError(key) return default def setdefault(self, key, default=None): 'od.setdefault(k[,d]) -> od.get(k,d), also set od[k]=d if k not in od' if key in self: return self[key] self[key] = default return default def __repr__(self, _repr_running={}): 'od.__repr__() <==> repr(od)' call_key = id(self), _get_ident() if call_key in _repr_running: return '...' _repr_running[call_key] = 1 try: if not self: return '%s()' % (self.__class__.__name__,) return '%s(%r)' % (self.__class__.__name__, self.items()) finally: del _repr_running[call_key] def __reduce__(self): 'Return state information for pickling' items = [[k, self[k]] for k in self] inst_dict = vars(self).copy() for k in vars(OrderedDict()): inst_dict.pop(k, None) if inst_dict: return (self.__class__, (items,), inst_dict) return self.__class__, (items,) def copy(self): 'od.copy() -> a shallow copy of od' return self.__class__(self) @classmethod def fromkeys(cls, iterable, value=None): '''OD.fromkeys(S[, v]) -> New ordered dictionary with keys from S and values equal to v (which defaults to None). ''' d = cls() for key in iterable: d[key] = value return d def __eq__(self, other): '''od.__eq__(y) <==> od==y. Comparison to another OD is order-sensitive while comparison to a regular mapping is order-insensitive. ''' if isinstance(other, OrderedDict): return len(self)==len(other) and self.items() == other.items() return dict.__eq__(self, other) def __ne__(self, other): return not self == other # -- the following methods are only used in Python 2.7 -- def viewkeys(self): "od.viewkeys() -> a set-like object providing a view on od's keys" return KeysView(self) def viewvalues(self): "od.viewvalues() -> an object providing a view on od's values" return ValuesView(self) def viewitems(self): "od.viewitems() -> a set-like object providing a view on od's items" return ItemsView(self)