Mercurial > repos > miller-lab > genome_diversity
view test-data/test_out/extract_primers/extract_primers.txt @ 26:91e835060ad2
Updates to Admixture, Aggregate Individuals, and Restore Attributes to support gd_genotype
| author | Richard Burhans <burhans@bx.psu.edu> |
|---|---|
| date | Mon, 03 Jun 2013 12:29:29 -0400 |
| parents | 2c498d40ecde |
| children |
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> Contig161_chr1_4641264_4641879 115 C T 0.323016 1 TCCGAACCGCTAAATCCTGACGACTGTTCAGTGAGAACGGGnTTCCAGCTCAGTGGAGAC >>>>>>>>>>>>>>>>>>>> 61 ACTCAGAGCTTATGTGATGCACCGTCGTGCCCGTGTCTGACTAAATGTGTTGCCAGAGAA <<<< 121 CAAAACGAAAGCCCCTATT <<<<<<<<<<<<<<<< > Contig86_chr1_30984450_30985684 670 C T 0.031427 1 TAATTCATGACGACTGCAGAAGGGCACTCAGAGGCAATTCTACTTGAGGATATTGTCTGG >>>>>>>>>>>>>>>>>>>> 61 TATACTCTGTCCTTGCTCAGGACATCAGTGAGAACATAGAAACATTCACnTCCCCACACC 121 GAAAGCGTCTGTAGACCGGCCCACGGGCCGAAGTCTTTGCATTTCCTCTTGCCATGCACG 181 AGCATTCCCAGTGGCAATCAGGGGCCAGCCCTTCTGTTTGGCCTCTGCAAGCTTGTATCC <<<<<<<<<<<<<<<<<<<< 241 TTG > Contig21_chr1_60697952_60699446 307 G A 0.507396 1 TCTGGGGCCATGTTTCTGAAGTAAGGCTGTTTCTGCAGCCTTGCGGGCTGTGTCTTGCTC >>>>>>>>>>>>>>>>>>>> 61 nCACCCCTTAATTCTTACCTGTAGGTGGTATTTGGTAGAGTGGAGTAAAACTGGAAACTG << 121 GTTCTCTGTGTTCCTGCATCT <<<<<<<<<<<<<<<<<< > Contig64_chr1_87343284_87345672 163 T A 0.038702 VspI 1 ATGGCCAATTCTGGTTTAcGCATCATTGTTAACAACTCTTCCATTCATTCTCAGAATTTT >>>>>>>>>>>>>>>>>>>> 61 CCCAATTCACATGATAAATTGTATGGTCACCTACcTACAACTAAACACTTAGTTTATTTC 121 TATTATTATTATTATTATTATTATTATTATTAnTAtTATTATTGAAATACATTTTTTTTT 181 CATAAACCGTTCACcCTTGTGAGAAC <<<<<<<<<<<<<<<<<<<< > Contig20_chr1_110679280_110679687 181 C T 0.659726 1 GAGCACTCAATGAGGGGTTCGACCCTTTGCAGACACAGCATGTAGGAGGAAGAAATGCAA >>>>>>>>>>>>>>>>>>>> 61 cGGGGCACCCCTGCGGGGGCAGGCTTCCAGTTCAAACTGATCnGGTCTGGTCCTGGGGCC 121 GGGCCAAAGTTGTGGTTTCcCGCACTCAAGTCTCCAC <<<<<<<<<<<<<<<<<<<< > Contig222_chr2_9817738_9818143 220 C T 0.092668 SpeI 1 AGATTTAGCTGGAGCATGCCTTTGCCCTTTTTAGCCTTTCCCTTTTACCTTTATCCTTCT >>>>>>>>>>>>>>>>>>>> 61 TATTCTTGAAATGTTGAAATAGATGGAAGTATAGCAGCTATCTTGTCCCATAATGATGAA 121 AACCAGGTACAAAGTTGGTGAAAACTAAAAGAGAGGAGGAGCCTGGGTTCTTGGTGGCAT 181 CATGAACACCTGCACnAGTCTAGCATGGTCTGTGCAAAATCTCCTGATCCAAGAAAAATA 241 TAAACATCCTTCTGTAGGGTTTTATTgCCTGAAGCAAAA <<<<<<<<<<<<<<<<<<<< > Contig47_chr2_25470778_25471576 126 G A 0.289103 Bsp1286I 1 GCCAGGCGTCCCTCTTTTTGAGTTCtAATTGTGTACATCCAATCCCCATCTCAACAAATA >>>>>>>>>>>>>>>>>>>> 61 GCTGAACCAGCTTCCTaTTTATTTGGTAGGTnAGCACTCTAGAAATTTGCTACACTGAAC 121 TCACCAAATTTATAATGTaAATTATGACCATTCTTTGCCATAATAATTTGGGGTAGGTCA 181 GATTTGGTTTTGGGGGCAGAAGAAATCATCATATCACAAGCATGTGACAGCTTCCAGCCC <<< 241 CATCTCAACTCCAAGAAATT <<<<<<<<<<<<<<<<< > Contig6_chr2_56859179_56859956 671 T C 5.308026 MspA1I 1 TATCCCAAAGACGTGTGTCTCAAAGCCCTGAGGTTTACAGCCAAACATGATGGACTGCCC >>>>>>>>>>>>>>>>>>>> 61 ATGACAAcGGATACAAATGCTAGCgTGGGTTTAATTATGCTAGAATTTTTATGATAATTA 121 TAATGATATTGTTATGAAGTATGCTAGGCTTTnAGCGGCTAGTCTCTAAACCTATTTTCC 181 tTATAAATCCTTTTATTTTTAGTGCACTATTTTATAGAATAAGAGGTTTTTCAGGAACAC <<<<<<<<<<<<<<<< 241 ATATATTGCATT <<<<<<<<< > Contig163_chr2_76402959_76404830 221 C T 0.178077 1 GCCCCTTCGAGTCCATCTTaCGCgCAGCAGCAGGAGGGATGGTCCCAACCACAAACCTAC >>>>>>>>>>>>>>>>>>>> 61 CCGCTGCCTGAACGCTTnAAGTGCCCTCCGAAGAAAGCCCAACTCCACAGCCTGGCAACT 121 GAGGTCCTTGTGATCTTAGCTTCCTCTGCCCCACTCCACAGCTCAGCCTCACCgGACTCC 181 CGAGCTCCTTAAAGGAGCCCCCGAGCCCCCGCACATGCTGTTCCCTGTAACCGGGTACTC 241 CACGGCTCGTCTGTCCTTGGAGGCTCAGCTG <<<<<<<<<<<<<<<<<<<< > Contig56_chr3_17326225_17327548 387 G C 0.224947 AgeI,HpaII,MspI 1 CAAAGGCAGTGATATGGGAGTGGAATGGAGAGGATGGGTGCCCCAGACTGGGTGCAGATC >>>>>>>>>>>>>>>>>>>> 61 TGTTCTATCTGGTGTTTGGTGGCTGACCATACnGGTGAGAAGAAGTGTcCAGGTTTCTGG 121 CTTGATGATGCCGACAGTTATGGCAGGAAATGCTGAAGGGGTGCACATGAGCTCCTGTTC 181 ATTCTTCACTCTTCCTCTTCTACCTCCAACCTTGCTACCTGTGTGTACCCGACTC <<<<<<<<<<<<<<<<<<<< > Contig108_chr3_46210055_46210874 367 A G 0.027845 1 TTCACTCACCTGCTTCCCTGCTAACTGTCACCGCCCTCCCAATGCCTTAAACCAGCTTAG >>>>>>>>>>>>>>>>>>>> 61 AAACACAAAATTTAAAAAACATTATGTTGAGACAAAAATATGTATAACCTGGAATATTGA 121 ATAACAAAATGAAAGGGAAAATGATTCAAGAACACTTGGATAAGGAAAACTACAAATATT 181 nAAGATGTACCTTTGAACTTCCTATCACTGAAAGCAACCATGGAACCAGTACAATGTAGA 241 CCTTCTGATCTGACTTTCTTTTGTCTCTTGCTGCTGGGAAGTAGAATGCCCC <<<<<<<<<<<<<<<<<<<< > Contig1_chr3_51588422_51589409 926 A G 1.147200 1 AGATTATGGCCTGTGTTTACcCCAGCCTcGCAGAACATTTTACTGGGGACACCTGCCAGG >>>>>>>>>>>>>>>>>>>> 61 TGGCAGATCAGAAGCCCGTGAGGCAGCCAGCCAATGGGAtGGCCAAAACCTAGGGCTTCG 121 TAnGGGAGGGAGATGTTTTCCTCgTCCCTCT <<<<<<<<<<<<<<<<<<<< > Contig65_chr3_80727952_80728283 39 T C 7.077725 1 CAAAGGCTTACTTTTTaGATCAACACTCTAAATTCTTAAnAAACAACAAAGCCAAATTTT >>>>>>>>>>>>>>>>>>>>>>>>>> 61 CCTATATCATTGAGTAGTTGATACGTCTTTGGTTTTGCGCTAGCAGT <<<<<<<<<<<<<<<<<<<< > Contig134_chr4_12145648_12148225 1326 C T 0.079565 BalI 1 AACCCAGAtCAGAAACGTCCCATGGCTAGTCATCTTCCTACACAGACTTCTgAGAGCCAA >>>>>>>>>>>>>>>>>>>> 61 GCATCGTCAAcCGGCCAtTCTnGGCCATTCTCCCGAGCAGATGCTGCCGGGATAATCTGC 121 AGCATGAAGCCCTCCCTCGGGGGAGACCCGACcgGGTCCACACAGGTCTGTcTAGC <<<<<<<<<<<<<<<<<<<< > Contig19_chr4_26233601_26233991 146 G C 0.163005 DpnI,MboI,Sau3AI 1 AATTTGGCTTCCTCTGGAGTtGTCCCTTAATGCTAGGTATCAAGTGCTGACAGGCCACAG >>>>>>>>>>>>>>>>>>>> 61 ATnAGGGTAACACATGATTACAGGGCAACACACTGTAACACGTATTCCCTTGCCTTGTCT <<<<<<<<<<<<<<<<<<<< 121 T > Contig17_chr4_61310346_61311158 267 C T 0.097708 1 TATTCCAGACCAACCAAAAGGTCTAAGGAATAATAGAAGCTTCACCCACAGACCTGCCAC >>>>>>>>>>>>>>>>>>>> 61 CCAACTTGAGAAACAGCACTTGCTTCCTCATAGAGTCGAAACGTCTTCGGTGGGTCCCCT 121 CCTGAAGCATCACCGCTACCTTTCCTCTTGGGAGTCACTGCCACCCnGAACTTGTTGCTG 181 CTTATTCTCTTTTATTTTTCTTGTTTTTGAAAGAACCCTGTCTTGGGTGTTAGGATAC <<<<<<<<<<<<<<<<<<<< > Contig31_chr5_4734956_4736547 1166 C T 0.020932 1 TGTTCTGCCATGCACACTTCTTCAACCCTTCAACCTGTGGGAGTCACCTCACATTCCCAC >>>>>>>>>>>>>>>>>>>> 61 AGcGAATGGAATATCTATCTATCTgnCTTTAGGGATTTGTTACGTTTTCTTTTTCTTCCT 121 TTTCCTTCCAATATCTTAATGGGCAATTTTGTGGACAGTTGATAGAGACAACGTCAGGAG <<<<<<< 181 CTGTTGGCCTAGTAAA <<<<<<<<<<<<< > Contig6_chr5_26899813_26900498 97 A C 7.369943 AvaII,Sau96I,SinI 1 AACTGAAAGTGAGAATTCTTTGTATTTGCTAGTCAAAAGGATTTCTAAGTCAAAAAAGTA >>>>>>>>>>>>>>>>>>>>>>>>>> 61 ATTTGGGAnCATTAAGTCATATTTATAGACTAAAATTTCATTCCTAAAGACAATTTAGTA 121 AAAATGCTAGGCTTTCTAGAAATTTAACCTAACATAAAAAATTACAGTAAGTTTGCTAAA 181 GAATCACAGAGTTGACTGACAGTTTCCCAGGTTA <<<<<<<<<<<<<<<<<<<< > Contig45_chr5_50892738_50892968 169 C A 0.496871 1 TGAAAGGGGCACTGGGAATTATCAGAACCTTCTGGGTAATTAAACTGGGGAAAGCATAAT >>>>>>>>>>>>>>>>>>>> 61 ACCATTTAGAAAAAGTTCAAGTGAGTCTTTTCCTTATTCTCCCnTGTACCCAGAAAAACC <<<<<<<<<<< 121 TGGACATGGTAC <<<<<<<<< > Contig45_chr5_76133561_76134403 388 A G 0.038045 1 CATGAGCATGCTGTCTGCACAAtGGGAGCACCCGTGATGTGAGAGTAGCCAGGCCACCCT >>>>>>>>>>>>>>>>>>>> 61 GGCTTGAGTGCTTTGTCCAAAAGGCACAATGGGAACTACACAGAAACAATCAGATTCACT 121 GCCTTCGAGGGTTTGAAGAAGACAGCTGAAGAGTAGGAGGTAGAAnCAAAAAGGCATGAG 181 AGGGGGAAGCAGAGGCTGCAAGACATGAGCTGGGCAGTACTGACgGGCCACACAGAGCAC < 241 TGGAGACAAGGTCAGGAGCCCT <<<<<<<<<<<<<<<<<<< > Contig111_chr6_5821219_5822519 1060 A G 0.230765 AvaI 1 CGTCAGAGCTGTCTTCCCTCCAGCCAGAGGGGCCCTGAGAAGGAAGGGGGCTGAACCCAG >>>>>>>>>>>>>>>>>>>> 61 GCgCCAGCCCAAGCTGCAGCGTGATCTGGGGGTGAGGCCCCCCGCTGCACAGGGGGCACG 121 GGGGTTCGGGCAGAGATCGGCTACCCATGGCCGGCGAGGCCACAgTGGCAATGGGCAGCC 181 AGCCTCCGACCAGCcGCCCCCnAGCTGCCTATTTAAGTCAGGAGCTTCTCCTTCCCgTGG <<<<<<< 241 AAGTAGAGGACAAATT <<<<<<<<<<<<< > Contig102_chr6_30271329_30271577 39 T G 1.158547 1 TCTTCCTTTATGCATCAGGGCAGCACCCTGGGGAGAAGnGGGGGGGACAcGTGTGTCCTG >>>>>>>>>>>>>>>>>>>> 61 GGGAAAGGGGTGTTCCCACTCCCTGCAATGCCTTCCCCCGCCCAGACCAGCAGTTCTCAG 121 TCTTGACTGCATGGACTCTCCTGGAAGGCTTTAAAAAATGTGGAGGCCGAGGCTTACCCA 181 tGACGGTTCTGACTGAATTGCTCTGGAGTAGGGCTTAGGCACTG <<<<<<<<<<<<<<<<<<<< > Contig112_chr6_51024554_51024851 100 A G 4.286925 1 CTTCATCATACCTATCATTGCCTATCGTTATACTATAGAGGTATTGTTCATTCTTTTTTA >>>>>>>>>>>>>>>>>>>>>>>> 61 TAGACTCATTGAGTAAAACTCAGGnCATGAGGGAAGGAACTTTGTCTCTTGTGCAATTCC 121 CTATCCTCAGTCCTTAAATATATGTATGCTAcCCAATAGGCACCAAATAT <<<<<<<<<<<<<<<<<<<< > Contig84_chr7_6648683_6650255 1297 G A 0.165637 1 GTTAGTTGTGAACACTCCCCAGGTAAACTGGTGTAACTCTTGGGGCAAAGCATGGAGTCT >>>>>>>>>>>>>>>>>>>> 61 ACCCAAAAATGTAGAATTCTGCAGAGACAGCTGTTTCTTGGTTGGGTTTCTAGACCAGAA 121 AATAGAAGATTATAATTATGGGTGGGAAATATATGTGCAAAAAAGTATAAAAGAAGAGGA 181 ACAGAATAAAnGGAAATGGAAATGTTTGTAATTGATAGGGATGTGGATGTAAATGCCTGG <<<<<<<<<<<< 241 CAGAGAGGAGG <<<<<<<< > Contig206_chr7_26281823_26282074 103 C A 0.947486 NheI 1 ATCCACATTCGCACAGCTCCTAATATAATATTTCATTGTTAAAATACTTCTGATTGGCCT >>>>>>>>>>>>>>>>>>>> 61 AGGACATATTTTTACAACTGCCTTGACTTCAATTGCTAGnAGTAGCTTGCCAAAGAgGTG 121 CTTTAATAAAGGAAATTAACTTCTTTTAATATGTTGACTGATATACCAAGGTTTTAGTGC 181 TATTAGTTTACCTTCCCCAAAAGTGCTTA <<<<<<<<<<<<<<<<<<<< > Contig38_chr7_50681997_50682600 42 T C 0.145997 1 TAGAGCTCTCAGCATCCAAGCAGAATCTACTGGGTCTGACTGnGTTCTGCTCTGTCACTG >>>>>>>>>>>>>>>>>>>> 61 GAATGACATTTCATTGCAGAGTACTCCTGCAGTACAACCAGGGCACAGCCTTTAAATTGA 121 CCATGTCCCCTGGTCTaCTCTGCTGAGCTaTGCACGGGTCCCTTCTGGTTCAAACACAGA 181 CTGATACAGCTCAGATGGAAGGGAGGCAGTTGCAGAGAAACAAA <<<<<<<<<<<<<<<<<<<< > Contig91_chr8_12804505_12805470 409 C A 0.175272 1 CTGTTTTCAGGGGCTACCTGCTATCTCCAGAACATGCCTGGCTCTCCTCCAAACACTGTT >>>>>>>>>>>>>>>>>>>> 61 CAAnCTGACCAAAGCAGAGAGCTGTATATGGACCACACATACCAAAAAAAAAAAAAAGAC 121 AGTCCACACCCTCTGTATAATTATATGGTACAAATAATAGAGTTTTTGTTAACTACCAGC 181 TCTTTTTACAAAGCCTATCAAgTATCATAGACAGTATAATGCTGTGATTGCATCTGTGAA <<<<<<<<<<<<<<<<<<<< 241 CC > Contig8_chr8_27811135_27812620 333 C T 0.272485 1 CTTCAAGGAAAGGAGGCAGTTTGGACAAGTCAAAAAAATCCCAAAACtTTGTACTATATA >>>>>>>>>>>>>>>>>>>> 61 AATCTGGCATATTTGTTGATGACanAATTGAGTTAGAAGCAAGAGTCAGAAGCTGACTTT 121 CATGCTGTTTTTCTGTTGTTTTCTGCGGCTCCCCTATGTACTAGTTCTCTTCCgGTGTGC 181 TGACAACTTCCAACTTcTCATAcCCTCTGCATTTCACGTTCTGC <<<<<<<<<<<<<<<<<<<< > Contig17_chr8_57490059_57490498 69 G T 0.522227 BglII,DpnI,MboI,Sau3AI,XhoII 1 CACCAGAAAACAGGCATGGAACAGATTCTTTCAnATCTTTAAGAACAAACCAGTCCTGCT >>>>>>>>>>>>>>>>>>>> 61 GACACATAGATTTTTGGACTTTTGGCCTCTGTAACTGTGAGAATAAATTTCTATTTTAAG 121 CCATCTACTTTGTAGTAATTTGTTATGGCAGCCCTGAGAAATTA <<<<<<<<<<<<<<<<<<<< > Contig73_chr9_29451535_29452248 616 A G 0.448230 Eco47III,HaeII 1 ACCCAAGAGTCTGAGAGGCCCAGAGGCAGCTGGAGGCTGGAGGAGTCCCaCAGGCAAACC >>>>>>>>>>>>>>>>>>>> 61 CTCCATTCCATGCGCCCCAGGGAGGCCAGGAAATCAGCnCTCCCAGGAGCAGGGAAGCAG 121 CAGTCCCTGGCATTGCCAGGGCAAGTGGCCACTCAGGGGAGAAAGGGGTGAGCTGGGGAG 181 GGGGAAGAGGGGAGGGGAGGGAAGGCAGAGACGAAGAGAA <<<<<<<<<<<<<<<<<<<< > Contig96_chr9_39008495_39009278 215 A C 0.426539 SspI 1 TGGCAAACTCCTTGTGAATGCCACTACACTTTCTGGTCTCTGTATGTAATGCTAGATATT >>>>>>>>>>>>>>>>>>>> 61 ACTGACACTTACcGCTACAAAGGCAAGACAAGCAAGACAACTGACATACACCCAgGTATG 121 GATCTATGAAGGGAGCTCCTTCTGCTAGAAAACAATATGTAAnTATTTACaTAACACCTA 181 CAATTCTAAATGGGTAGTTTCCCACATGTGAGATTACATCTTCAAGAGCCAAAGGACAAT <<<<<<<<<<<<<< 241 TTGTGCATC <<<<<< > Contig22_chr10_15505382_15505589 172 T C 2.860867 1 CGCAGGCGCCCCAATTATTCTTAACTCCTTATCAAAAGTTTTCCTAATTGAAACTTAAGC >>>>>>>>>>>>>>>>>>>> 61 ATCACCTGTTTATTTCCTCTAAAATAAATGTATACATATAGAATTTCAGTAAGATAATGT 121 CTCAAAGAAGATGATAGCCATGGGAGAGGCTTATATGTACTTCnTATAATAAACAACGTC <<<<<<<<<< 181 CAGGTGTGATATT <<<<<<<<<< > Contig69_chr10_40547265_40548153 371 G A 0.137642 Bsp1286I,CfoI,HaeII,HhaI 1 AAGGGGAAGAACTGAAGCGAGTGAGAAGCACGGAAGGACTTTTAGGTTTACAGCTGGGGT >>>>>>>>>>>>>>>>>>>> 61 CACTGGTCTTCGCTATGGATGCCTCTCTTAAAGGAAAGACTAATTCTCTGTGGGTACTGA 121 AGGTGgGAGATGAATGTAGATGGGCnCTCGCATGTGTCAATGCTGACGGCTTGGTGAGAG 181 GTTTGGTGCGAGGCCAAAAAGGCgGGGATgAGAGAAGGATGACCTAGGGAGACTGCAGGG 241 TATTTAAAAGTTTGGGTCCAATTTTTCTCAAAGTGTGGCCAGTGCAC <<<<<<<<<<<<<<<<<<<< > Contig9_chr10_51475063_51476054 770 C T 0.393903 1 GTCTTCCTTCTAATCCCCaAGCcGTGAGAAGCTGTCTGAGCGCTCCTTGCTGGGCGTCCC >>>>>>>>>>>>>>>>>>>> 61 TGCATGCCTGTACTGGGGCACACCTACGCCCTGGGTCCTGCTnCTGAAACGGTGTCTCAT 121 TTCTGTAATCGCTCCAAGCTTAATGGCTCTCAGCCTTGTGGGTTGCAGTGGAGAGAAAGC <<<<<<<<<<<<<<<<<<<< 181 ATT > Contig72_chr11_7142765_7143772 146 G A 1.137400 1 GGTGTAGTGAGGCTTCCACGAGCAGCCAGGCTTACAAACTCATCCTTAGCCTAAAAACTC >>>>>>>>>>>>>>>>>>>> 61 CACnAAGTCAAGTATCTTGTGGGTGTTGAAAACTGTTCCACTCTGCAGAGCACCTCTATA 121 TGAAGTAATAATCATGGTATAATGTCCTTCTTCACATACCTGCCAAGAT <<<<<<<<<<<<<<<<<<<<< > Contig7_chr11_40017076_40017630 352 C T 0.336170 1 TCGGTCCTTCCTTGATCACATCTCCATGATCCTCCCACTGTTACTTGGAGGAGAATTGTT >>>>>>>>>>>>>>>>>>>> 61 GCTTCCACAAATCAGATCTCTTTATTTTTCATTTATTCAACAAATGTGGACTGAGCTCTT 121 TGtATAGTACATTCTGTGGGCACTATTCACTAGACACACTGTAAACACTTCTGCTTCCTG 181 ACTTTGTTCAGATCTACCCCCnTGCCTGATCTGCCCTCCCCACCTGGTTTTCATCTCAGG 241 CTTAGGTCAAGCCTCATtTGCACTTC <<<<<<<<<<<<<<<<<<<< > Contig16_chr11_53408448_53408790 187 A G 1.366749 1 ATATTGCCAGTTTTAATGGGTGATATTTAGTCCTCCAATTAGACCTCTTTAGTGCATTGG >>>>>>>>>>>>>>>>>>>> 61 ATACCAGTGAGCAATCATTCTGACAnAATTTCTGCTGCCTTGATTTTTGTGACAA <<<<<<<<<<<<<<<<<<<< > Contig21_chr12_18403415_18404381 586 G T 0.068025 1 AGTTCCAATGTCAGAGTCCCTCCCTCTACCTCCTATCCAACCcGCTACTTTTTTTnTTTT >>>>>>>>>>>>>>>>>>>> 61 GTTTTACAACAAAAATAAACCTTCTTGTAACAATTCCAACAATTACAAAATAGAGTAAAA 121 TGTTTAAGTCTCTACCTAAACACACTCATCCTCAGAGAAACTCACAGGTAATTTCGGTtC 181 GTATCTTCCCAGACCCTCTTCTCAGcTTTCACACATACTACATACACATGAACTTCGAGC <<<<<<<<<<<<<<< 241 TGGCTGTT <<<<< > Contig41_chr12_25565452_25566993 475 G T 2.230501 1 TTACATAGCcAAGTGGGAAACAAAGcTACATTTTTnAATATTAATAAATCTGTTTTTTTA >>>>>>>>>>>>>>>>>>>>> 61 AAGGGTTaTTATACAATATTATCAAACTTCTTGTGAATGTCAGAATCCAGAACAAACCTA 121 AAATCAGTAATACTTGGGAAAGACGCAAATAGTCCCTCTTTCCACT <<<<<<<<<<<<<<<<<<<< > Contig5_chr12_53880670_53882675 1221 A C 0.061001 1 AAGCCATCCATGTGTGTGCTTTCATAATATATTATGACAGGAGATTAAATTCTAAGTAAA >>>>>>>>>>>>>>>>>>>> 61 GATTAGTCCCCAGTACAGTAGTGTAAAATAGGACTTTTCTCCCTTTTTCTCTCCnCGATA 121 TTCCAAATCAGAGTTTGGCCAAAAAgAAGTCAATAAGGACTTAcAAAAAAAAAATCTCCA 181 TTCACTGAAAGTAGCTTGCTAGCATTTTCCTTTCTcCTGATGTTGCTCCATAACTTCAAC 241 CCTTTTTAAAACTGTCTACTGTGGGGTAGACAGAAGGCGTGGTCGTGAGGTAAAGGTCAA <<<<<<<<<<<<<<<<<<<< > Contig107_chr13_26045881_26046290 341 C G 4.509990 1 CATAGATTGCCTTTTCCAGTCcAGAAGTTTAGAACAGACTGCCCTGAGATCATGGTGGGA >>>>>>>>>>>>>>>>>>>> 61 AATATAATACTCATTAGGTTgTTGAAATTCTTGTAGGAATGGAAGAATTTCAGCTTAGGC 121 ATTCTGCTnCTGTATTCCCAGATTACAGTGGGAACTGTATGAAA <<<<<<<<<<<<<<<<<<<<<<<< > Contig251_chr13_28498333_28501066 864 T G 0.067573 1 GCCCTCTGGCTTCTGTTTGGGAGGTAGGGCGGGTGGGCAGGAAGGGAGGACGGTCGGGGT >>>>>>>>>>>>>>>>>>>> 61 ATTGGTTCnCCTCCTCCtGCTGGGTCCCAGATGGATACAGGCCAGGTCTG <<<<<<<<<<<<<<<<<<<< > Contig55_chr13_53467708_53468101 221 T G 5.717222 HinfI 1 AATACGGTGAAGAGCAAATGAGAAACATTTCTTCAAACATTTGTAAAGTGAAAATATTTA >>>>>>>>>>>>>>>>>>>>> 61 AAATGAAATAGATnCCAAATTTTTTCTTCCAAtGGATTATCTACTGGGTTCTGAATATCA <<<<<<<<<<<<<<< 121 CAAAGACAAATG <<<<<<<<< > Contig48_chr14_11839435_11843272 3014 A G 0.907583 1 GTGCTTCCAGTCAAAGGGGAAAACTTGATAGACAAAAGTTTGGATTTTTTTTTTTTTCCT >>>>>>>>>>>>>>>>>>>> 61 TCTCCTTGGGAGTATGTCTGAGTTACCGTTTTTAGTTTTGATCTGTGGAAAAAGTGATTA 121 TATAGGTTCCAAATCTTACTTTTCCCTTTTTGTTTTCAATAGACTTTTTGTGATCATTTC 181 AnCATAGTTTGTATTATTAAGTAGGGGTTTTtTTTTGTTTTGGTTTTTTTGTGGTTGTGC <<<<<<<<<<<<<<< 241 GTTGTAAG <<<<< > Contig28_chr14_26905747_26909514 975 G C 0.116622 AluI 1 CTGGTACGTGCTTCTCCTCCTGCAGCCCACCGTTTACTTGGTAAGTCGCTGCCGATCCGG >>>>>>>>>>>>>>>>>>>> 61 CGCCCCCGCAATCCCACCCTCGTCGCGAGGACAGACAACCAGGGGCGCGCGGGAGGAGGG 121 TGAGACCGCCAGTTCAGCGGAGCAGCGTTCCTAGCGACCGTGTTGGAACAACTTTGGCAA 181 nCTGGTCTTTGGATCCCTGCGGGATTTTTCGGGTTTCCCACCCTCATTTCTTGCTT <<<<<<<<<<<<<<<<<<<< > Contig64_chr14_56768376_56768902 473 C T 8.281311 1 ATAAGAATCTCCTCAGTAGAGAGAAGCCTGATCTACCATGATTTTATTTGAGTAAAACCA >>>>>>>>>>>>>>>>>>>>>>>>> 61 TTGAAACAAACAnTTCAAGAAAGATGGTCAGAGAAGCAAAATGTAA <<<<<<<<<<<<<<<<<<<<<<< > Contig60_chr15_18493036_18494316 150 G A 0.125024 1 CGCCTGGAATAGCATGGTGCCTTTAGGAAATTACATCTAACTCTCTAGGGCTGGAAGGAA >>>>>>>>>>>>>>>>>>>> 61 CACTGAGTnAACGTAAAGAATTGTGGGAGAGAAGCCTTTAGTTAGATCATGCAGGGCtCC 121 GTGCTCCAAATGGGCTTTGTGTTTTG <<<<<<<<<<<<<<<<<<<< > Contig112_chr15_26772864_26773267 374 C T > Contig119_chr16_6160274_6160477 180 G A > Contig60_chr16_28079136_28080263 588 T G 5.998983 NsiI 1 TTAGAGAATTATTCACTCCCCCAAAAGTAATAAAAATATAAGAAACAAAGCATAATCATA >>>>>>>>>>>>>>>>>>>>>> 61 ATGCAnTGGTTGAGTTAGTAGTAAATAACATTTTAGGGTCATAAATTAAAAACTGAATTG 121 AGATTTAGCTGGAAATTGTGATATAAATGTCAGGATAAGAGAAGCAAGATTGAAAGAAAG 181 ATGGATTAAAAATGCTAAATCCTTCTCTACTATTACAGGAAATTGATAAAAGAAGAGAGA <<<<<<<<<<< 241 GGAAACAGCACATAT <<<<<<<<<<<< > Contig31_chr17_12128267_12129637 205 G A 0.246305 1 TGGAGGCAATGGAGGTGAATGAGCCCCAGTCCTGGACCTCgAAGCAGACTGGCCAGAGAC >>>>>>>>>>>>>>>>>>>> 61 ACCAGGATTTAAGGCATGTGATGAAGACACAGTTCAAAGTGACGAGCCCTGCAGACTCTT 121 CnGGAGCAGAGgTAGAGTGATGACCCGTACCTGGAAGGTTTTAGGAAGGATAACAATGAA < 181 TTTACCAGAAGGCAGGGGTAGA <<<<<<<<<<<<<<<<<<< > Contig99_chr17_26021506_26022200 505 C T 0.171977 RsaI 1 TGTTGCCATGTTGCCAGTATGTTTTTTTAAGTTTTCCTTTTTAATTTCATTTATGATATT >>>>>>>>>>>>>>>>>>>> 61 TTTTGGAGTAnaGAAGTTATCATTTCACATGATCAACTTTTCAGTCTTTTTCTTTATAAT 121 TTTTAAcTTTGTTGTCATGTTTAGAAAGGTTAAATTTATACCTTGTAAAATAcCTTCgCA 181 AATTTACATTTGGGAAATTATTAGTAGTATTATTTcAGGAAGTTaTTATTTTTAAGTGTT <<<<<<<<<<< 241 GGGTTCCCGTGA <<<<<<<<< > Contig27_chr17_61713766_61716585 1056 G C 2.199527 Eco47III,HaeII 1 AAGAGGCGCAGGAAGGAGAGTCCGCCcGCCGCAGCCCGCCCGCCGGCTCCTCAGACAGCn >>>>>>>>>>>>>>>>>> 61 CTCGCaGGTCCTCCAGCCTTCCAGCGAGAAGAAAGAAAGAGCGTCACCGGAAACCACCGA <<<<<< 121 AACTCTGGGGTAGAGCG <<<<<<<<<<<<<< > Contig229_chr18_3706523_3708577 1076 A G 0.444778 1 TTTAAACTCCCGTGTCTGTGCTTGATTATGGCACCGTTAcTCTCGGACGTATTTAATTTT >>>>>>>>>>>>>>>>>>>> 61 CTGATTCTGATTCATTGGTCTATTACATGAGCAATTGGTGGnAAGTGATGTCTGTCTGTG 121 GCCCTTACATTATTTATAATAAAACTCTCCTTCAAAGAACCTTTGGACGATGTCTCCACA 181 ATTACAGAATGAGTACAAATTAGTTTTCTAAAACAGCAACTGGTGGTTAATTAAGTTTTG 241 TCATGTTTTCTGGAGATGAGTGTCTCATGGTTTGGATACTATGAAGGCATTTCTGCAAGG <<<<<<<<<<<<<<<<<<<< 301 TT > Contig82_chr18_27305489_27306229 566 C T 0.348750 1 CCTGAGAACTTCAAGCTCAGCGGAGGGCTGAAAGGGAGGTAACCACTTTTGTACTAAATT >>>>>>>>>>>>>>>>>>>> 61 GTCACCTCCTTGCTTATTTTCGTGAAGTTCTAAAGAACACAACTATCTCACTAACACAAc 121 AGATTTATTATTGAGTTGTCAGAATCAGCAGCTTTTAGTCACngGTCACTTGTGTGCCTC <<<<<<<< 181 CACTCCATCATAACT <<<<<<<<<<<< > Contig64_chr18_55979770_55980315 49 G A 2.123800 1 CCCCAAGGAGACAGGAGGGCAGGCTGTGTGGGTTTCCTGGCCCGCAAnCCCTGTGCAGGT >>>>>>>>>>>>>>>>>>> 61 GCGgTTCTGCCAGGCCCGCAAATCTCGGTCTCACTTAACTGCGGCATCATTTATGCTAAT <<<<<<<<<<<<<<<<<<<< 121 G > Contig146_chr19_5221790_5223013 143 A G 0.869806 1 TTAGAATGGCTTTTTCACGGAAGGAGATGAGTTATAAAGTACGGgTGACATTTTTTTGTC >>>>>>>>>>>>>>>>>>>> 61 TTGnGTTTTTTTTTTTTGTCTTGTTTTTAACTGTTGTTTAAGTCAGCCAACAAGTACATA 121 ATTTCTCAGCCCACATTTAAAAATTATCAACTCATTTTCACTTGGAGGTGTGGACATAAA 181 GCCATAAATATAATTTGCATTCTGCTGACCTGTTTC <<<<<<<<<<<<<<<<<<<< > Contig129_chr19_25541958_25542221 202 T C 2.550968 HinfI 1 AAGAATCAAGCATGCATTCTGCCTTCCCCATGTGAAAAGTACCAGGTGAGGATATGTACC >>>>>>>>>>>>>>>>>>>> 61 TCTTTATATCCATGTTCCAAGAACAACAACAACAACAAAAGAATGAGAGTnACCACTTTA 121 CAACCCCCAAAGAATTAATGGATT <<<<<<<<<<<<<<<<<<<<< > Contig60_chr19_54013816_54014398 281 A G 1.271267 1 ATTTCTCTCGCCGATATTGAGGTTAAGTATCCCTCTAGGCTAAAAGACCAGCAGCTTTTC >>>>>>>>>>>>>>>>>>>> 61 TTAAACCTATTACAGGAATCCCAATAATGGAAAGAAACGAGGGGAGGCAGTGCTCATGTC 121 ACATTCTTCCAGAAATCAAATATAnTGGGTTTTTTTGTTGACGTAAATACATAGGTTGGA 181 AAAAAGGTAGGGGGAAAGGAAAA <<<<<<<<<<<<<<<<<<<< > Contig50_chr20_12138509_12141975 3206 C A 0.383804 1 TCACACCAGGCTCAAGGTTAAGGCAGAACACAAGATAAGAGAGCAAGCTGGCTTCCTGTC >>>>>>>>>>>>>>>>>>>> 61 CCCCAGCTGGCtTnCCCATGGGAGCAGAAGCTGGATGGGTGCAGCTGCTGGCTAGGGATC 121 CTGTAAAAACTGAAGACCTCCaGTCTCCAGGGCTGGAGGaGGGATTCCTGCCCTGGGGGC 181 AGGCCaGATGAGAGGGATGCGATAATGGCAGGTGTCTCCACAAGA <<<<<<<<<<<<<<<<<<<< > Contig36_chr20_32631363_32632049 176 G A 1.149790 1 CTGCCCGAAACAAGTTCCTCATTGTTTCCTnCGTTCTGTGCTGTGGCGGTTTCTTCCTGG >>>>>>>>>>>>>>>>>>>> 61 ACCCAGAGTCCTTTTCcGAACATTAGCAACTCCATTATGCCACACAGAGATGAGATTTGA 121 GAAAGGAAAATAAAGTTGTCTCGTGATATGGAGGGCAAAGCTGATAG <<<<<<<<<<<<<<<<<<<< > Contig50_chr21_4178523_4178687 121 G A 0.483377 1 GTAGGAATCTCAAGCCCCAATCTACTTTTCAGGAAGCTGAGGCTCAGAGAAGTAAAGTAA >>>>>>>>>>>>>>>>>>>> 61 CATGCTCAAATTCACACCAGTAAGTGAGAGAGTTnTAAGTAACTATAGTAAGTGACAGAG <<<< 121 CTGGGATTTGAACCCTCAT <<<<<<<<<<<<<<<< > Contig129_chr21_31045749_31046924 381 A G 0.028026 AcyI,Hsp92I 1 CAGCTGAAGCACCCTCTCTGACCAAACCTGATCTTTCTTTTGGGGATCCTTGACnTCTCA >>>>>>>>>>>>>>>>>>>> 61 TAAGTCTTTATGAACCATTTGTCCTTCCAGCCATCATTTCCTTCAAC <<<<<<<<<<<<<<<<<<<< > Contig159_chr22_7896450_7896974 109 G C 0.465232 1 TAACTGAGTGATAGTGCTTGGcGCAAGACACTAGCAAnCCTGTACTCACCTTCCATTCAT >>>>>>>>>>>>>>>>>>>> 61 TTATGTCATAATAATAATTCTTTAAATATGGAAAGcGTAgAAACAAAATAGGAACACTGC 121 TAAGTATTCATTTAGGTAATAAGTTTAGTGCTAGATGTGTGACAGGAATTATTTTcATTA 181 ACCACAAGCAAACATTTATGGAATGTCCATTGCATGCTGAAATGTA <<<<<<<<<<<<<<<<<<<< > Contig23_chr22_34612023_34612568 167 C G 0.409430 1 TATTCTACCACTCAAAGCCAGCCTGAAGGAAnCCTGGGcTCTTTCCATCAGCTATCTGAC >>>>>>>>>>>>>>>>>>>> 61 AAGTTGATCTAAAcgTGTAGAAAGCATGCCTGGCTCCACACCTGATTTCATGTGGAGCCA 121 TCAGCTCTCACACGATCACCTTG <<<<<<<<<<<<<<<<<<<< > Contig26_chr22_57817664_57819633 1453 A G 0.471213 RsaI 1 TGCcCACCCACATCAcTGAACAATTCAGAGAAGATTCCTTTAACATATGCATTCAATGTT >>>>>>>>>>>>>>>>>>>> 61 TAAGCCTCGCTAACATTTTTTAAGCACCGAACCTTTTTAAAAAGGGCTCTAAAAAATAAG 121 CATGAAACTAAATCTCTCTAATACgTCACGTGACACACATGTAtATAACCCAGAAGGTnC 181 ATCTAGGGAAACGCAAAAGGAATTATG <<<<<<<<<<<<<<<<<<<< > Contig133_chr23_3525134_3526502 1223 A G 1.358849 1 TCCTATTTTGTCCCCAAGTCCCAGGTTCAGGAGCTCCATTAAGTCACAGGTAATTCAGCT >>>>>>>>>>>>>>>>>>>> 61 GAGAGCCTGCAAAATGGCAACCCCACCTGAGGCACTTTCTTTAAATCAACTGTATCAAGG 121 TAACATTTACACAGAATAAnAAGCACTCATTTTAAAGAAATAGCTTGATGAGTTTAGTCT 181 AATTGTATCTGTGTAGCCACcACACAGTCAAGATa <<<<<<<<<<<<<<<<<<<<< > Contig35_chr23_28447813_28449115 70 T A 0.163155 DdeI 1 CCTTTTCTCTCCATTCACACCCCATCCTTCTTnGTCCCTCCAAAACTCCTAGCTGTTTCC >>>>>>>>>>>>>>>>>>>> 61 CATTTTAGGGTCTCTGCATTTGCTGTTCCAAGCAAGCTCTGCCCCCAAATGATCTGGTGG <<<<<<<<<<<< 121 CTTGTTCCCTC <<<<<<<< > Contig50_chr24_22515247_22516072 761 C T 0.190253 1 GGGGAGACCCTGATCCATCCTCATTCTACTGCTTCCCGATGTCCCAGGCCTGCtGTTCTA >>>>>>>>>>>>>>>>>>>> 61 CACGAAAGCCCATTCngTGCCTCCAAGTAGGGAGCAGAAGGGAAGAACACA <<<<<<<<<<<<<<<<<<<< > Contig84_chr24_29196623_29199644 466 C T 0.214603 1 TAATTGGACaCTTTTGACTTGCGTTTCATGATTTTGCCCCATTTTTCTCTGCnGCAATTT >>>>>>>>>>>>>>>>>>>> 61 GGCCAGTGATTCCTGTCTTTCCCTCTATTATCCACTCTGATTAACTCAGCTGCACCTGCC <<<<<<< 121 AGCCTTTATTCCTGCA <<<<<<<<<<<<< > Contig144_chr25_4011170_4013134 541 A G 0.086768 1 GGTGAGGtGGAGAGTGGCAAGAGCTGTTGGTGGGCGTGTGTGAGCCAGAGGGCAAGCGGG >>>>>>>>>>>>>>>>>>>> 61 GAGCTCCTAACTGCAAcATCCAGGGGCAGTCGATACTGCCTGGGAAGTAGGAACTGCTCT 121 GGAGCATGAGTGGAATTAGCAGATGGATAACAAGGGAGnGCGAcaAGGGCATTTTATGAA 181 GATGGAACACCTTGGAAAAGATCAGATTGCTGAAGCATCCGTTTGAGAAAGCACAGATAA 241 CTTTTCAAATCTGAAGAGGAGGGACATGACGGGGAGATGAGACTAG <<<<<<<<<<<<<<<<<<<< > Contig103_chr25_38891221_38892140 407 G A 0.166581 Alw44I,Bsp1286I,CfoI,HhaI 1 GTGGGATGCAGGTGCTGTGTCTACCCACTTCTTCCGGGGACCAGCCCCTCTCTGGCCACA >>>>>>>>>>>>>>>>>>>> 61 CCCACTTCCTCTCATCTTAACTGTCCAAATTTGCTGACTCAAAGGGATGTGTGTGCGTAT 121 GTGTGTGTGTGCnCACATGTGCATGCATGTGTTTTGTGTCTTTCACTCTCAAAATTATTT 181 AAGTTCCCATGGCCCTGCCCTGATTTATCTCCCAAAT <<<<<<<<<<<<<<<<<<<< > Contig204_chr26_4311195_4311778 170 C T 0.085422 1 AACAGAAGCCTGTCCCAGCTACAGGAGGGAAACGGGCTCGGCAgCgTGGCACTGCCTCAC >>>>>>>>>>>>>>>>>>>> 61 tGTCACCCCCAGGAGCCCGGGAAGCCGTCCCTTGAnTCCTCAGTGACGGTGACCATGACC 121 AAGGGCAGTAACTCTGCCCGCGGGACACAGCgCTCCTGCTCCCgACgGAAGGTGTGCCGG 181 CCACAGAGCGCACGTTGgGGCCgAGTTCAGGGGCAGAtAGGAAGACACAGGa <<<<<<<<<<<<<<<<<<<< > Contig146_chr26_26622638_26623906 574 G A 0.318381 1 TTTCTGAGATCACACAGCCAGGAAATGGGGAGCCAAGATTTGAACCCAAGCCTGTCTGAT >>>>>>>>>>>>>>>>>>>> 61 TCTGGAACCTGCACCAGAaCCACACCTCAgCCCTGCCTTCCCTTGGAAGGCTtACcnTTG 121 TGCCTGGAACATAGTAAGTGCTCAAAAAATGGTcTAAATCATCATCGTGTaTTAGGAAGC 181 CTGGGTCCACACCCCTTGGGCTGTGGAGTGTCTTGAG <<<<<<<<<<<<<<<<<<<< > Contig135_chr27_6853874_6854079 158 C T 0.060201 1 AAAGGGTTCCAAGTTACGGGATTcATACGGGAAGGCTCCcGAAATAGAAATGATCGTTGT >>>>>>>>>>>>>>>>>>>> 61 AACATGGGGAGATTTGTCAGGGACAgACAnGAACTGTCTTATAAAATGCAGCCCAGTTTT <<<<<<<<<<<<< 121 CTTcTTGAGA <<<<<<< > Contig64_chr27_34654435_34654621 132 C A 0.296658 RsaI 1 AAATTGGTCAGTGACTGGGAACACGTTCCGAACCAGCTCCGTGGATTTACAAGTTTTCCA >>>>>>>>>>>>>>>>>>>> 61 GTAGAAACGGTCCTCCAAGCGTnCCTGAAGTGCTcATTCATTACCGCAAGGTG <<<<<<<<<<<<<<<<<<<< > Contig131_chr28_6481806_6483783 138 C T 0.387007 1 AGaCCCTCGAAATTCTCCAGTTGTCAAATTCTTCCCCAGTnTCTGCTTGAgAGATTTTCT >>>>>>>>>>>>>>>>>>>> 61 CCTAGCTTCAGAGCCTTAACTACAGAATACTGAGTCTTTGCTCAAGCAGCGGCTCAACAC 121 ATAACCCCTAAGCTGCCAAGGCTTTTCTCCCCCAAGACTTTGTTTCCTTCCACGAAACCT <<<<<<<<<<<<<<<<<<<< 181 TC > Contig60_chr28_30197166_30197364 92 T C 1.139483 1 AATCAGAAAGTCCCAGAGGTGGAGACTACAGCAAATTACCTGACATTTGTCTTTGATGCT >>>>>>>>>>>>>>>>>>>> 61 nTATGTAAAAACTCTGGGTGGCAGGAAAGCACTTAAATTTACCTTGTAGAGCTTTGCTAC 121 CCAATAGAACATTCTGTGCTGATGGGAATG <<<<<<<<<<<<<<<<<<<< > Contig29_chr29_4726399_4727143 559 A T 3.113735 1 CTTTTTGTGGCCAAAAgTGACAACATAATTTTCAAAATGGGAAACGATGATTACAAATGA >>>>>>>>>>>>>>>>>>>> 61 GTGGAACACATGTTACAGTGGCAAGATGTGTGAGCAATGCTGATTCAGGGTATAATGGGT 121 TGGTTGTAAAACAAATATGAGTTTCTAATATTCGGGCATATTAAACAATCTAAGTTnTAC 181 AAAATCTCTCTTGTACTATTTATTGGGTAACTACTAGTAAAGGAAAGGCCTAATAGGCTG <<<< 241 TTCCCATAAAAAGAAGCTAC <<<<<<<<<<<<<<<<< > Contig1_chr30_5992217_5993068 106 C T 1.078937 1 CTTGAGACAGCCATGGTGTTTGTTTCTACCTTTCCTCTAAGAAGACACCTGTATACAGAT >>>>>>>>>>>>>>>>>>>>> 61 ATTCCnTGTGACTCACACTCATCCTCATAGACATCCCCAGTATCATTTCTGTGAAGCCTT <<<<< 121 CCTTGACATTTTCCAACA <<<<<<<<<<<<<<< > Contig165_chr30_25804389_25804926 190 T C 0.328844 1 CCGCTTGTCCCGCTCTGTGATTTAGATGTTTCACGAGCGGGAAGGTGGGGGGATTGATTC >>>>>>>>>>>>>>>>>>>> 61 TCTnATTCGCGCTTCTCCGCCCAGGCTGCGCATTAGAATCACTTGGGGAGCTTTAAAACA <<<<<<<<<<<<<<<<< 121 TGCCAG <<< > Contig38_chr31_5164423_5166573 2074 C T > Contig17_chr31_26433828_26434459 498 T C 4.814134 1 CCATGCAATCTCATGCAATGGTTAAAAGCAATGAATTTGTTGTACTCAAAATACCTTGGT >>>>>>>>>>>>>>>>>>>> 61 TGGGTATTAAAAAGTTTTnAGTAAACATAATGAAAAAAATAGAAGTAGATAAGATCAACA <<<<<<<<<< 121 CACCTACACGAATTA <<<<<<<<<<<< > Contig9_chr32_19479532_19479735 12 A G > Contig30_chr32_25902721_25905783 208 C G 0.322381 AluI,HindIII 1 TTCACAGTGTTCTCCCAAGGCACAAATAGAATGCTCAGTCATTGGTTATTTTACTTAGAT >>>>>>>>>>>>>>>>>>>> 61 ATTCCTTTCTAAATATAGACTTACCTGTTATTTTTTCCTATACTAATAACATTCAAATTA 121 TCTATGTGTACAATAATAAACACTAGGCATAACTGTATCTCAGTACCAATTTCCTTAGAA 181 GGTAAAnCTTATTTCAGTCAAGGTCTAGGCCAAGCATTGA <<<<<<<<<<<<<<<<<<<< > Contig18_chr33_22207246_22209159 1363 G T 2.559961 1 ACGACTGCCCTTTTTCCCTCTGTCTCTATTTCTCCTACACACACACACACACACACACAC >>>>>>>>>>>>>>>>>>>> 61 ACACAgAGTGAGCTTTTAGCAACCTTGTTTAACATTTGGAAAGGAATAGCTGACACAACA 121 GAGGGGGGnATAAGTAAATACATTGCATGGCTGTATATAATTGAACATTCTTCAAATTCT 181 TTAAACAGAAATTTCAGTACCATGGAGATCCTTGAAAT <<<<<<<<<<<<<<<<<<<<<< > Contig170_chr33_26189421_26189940 292 T C 0.307330 1 TTCAAGTTCCCCTTTTGTGCCTTCACACACTTGTnTTTATGGTCTCTATTTAAAAAAAAg >>>>>>>>>>>>>>>>>>>> 61 AGACAAAAACCTCTTAATAAATTTAGGAAGTAGTCCTCACTCTTTAAAGGAATTGTGCTT 121 AAAGCAGCAGCTCTTCCTCACTCCTTG <<<<<<<<<<<<<<<<<<<< > Contig113_chr34_13341080_13341643 236 C T 0.412222 Hsp92II,NcoI,StyI 1 AAATGCTCATTTCCCAACATTCAGTGAAATGCCTGATGACTAATCCTTGCTCCaTGGATC >>>>>>>>>>>>>>>>>>>> 61 CTGGGGGTCCCGTGCACAGAAGAGGGTGAGGTCTCTGCCAnGGACTGTGTCCCTGGAAAT <<<<<<<<<<<<<< 121 GACAGGGCA <<<<<< > Contig152_chr34_31794848_31795540 242 G A 2.779642 1 ATAGGAAATAAAACCCCAGCTCTCAGAGnAAAGCAAAATACTTTTAAAAAGATGAAAAAG >>>>>>>>>>>>>>>>>>>> 61 CATCAGAGCTATGAGACACAGAAGATCTAGAGTATAATTGTGTTTTTGTATAGAAGGGAG 121 AGAAGGAATGCTGCAGGAGCCACATTTCTCCATCTA <<<<<<<<<<<<<<<<<<<< > Contig47_chr35_3666773_3667898 348 G T 0.234571 1 GCTGCCTCAGCAGTTATCTTGGGTTCTGTTAACTTTGACACACCTTTCACGAAGAAATTC >>>>>>>>>>>>>>>>>>>> 61 TTCATTGCAGTGCTTGAACAATCTGATTGTTCAATCTGATTnGATTCTATTTCTTGCTGA 121 GATAATGTTCTAGCACCTTCTCTGTGGATCCCCTTAT <<<<<<<<<<<<<<<<<<<< > Contig74_chr35_25394343_25394813 303 A T 4.297720 1 AGTTTCCCCAAATGTTCATGATTAACCAGGTAAACTGAAGATTAACCTTAAATATATATT >>>>>>>>>>>>>>>>>>>> 61 TCTTTGAGTCATTATAATTAAATTAACTAGGTTGTTTTCAAATATACTAATAATAGAAAC 121 TGAAAAAATAATCCAAGTAATATaTCTGAATTGAAAAAAAAAGTAAGGCCATTGTATAAA 181 ACAACTGAAAGTTTTTGGAnAAGGTACTATTTTTAATTTACAGTGCATTTTTTTAATCGG 241 CATTTCAAATAATAACTTCAATCaCACACACAAAAATAAACCAAATCAACTGCATGTAAG <<<<<<<<<<<<<<<<<<< 301 GGaAGT <<< > Contig5_chr36_4562983_4563634 343 C T 1.168507 1 ATATGAATGGTGGTGATGGATTCAGCATCTTGACTCTTTTTCAACTATGTCAAGATTTGC >>>>>>>>>>>>>>>>>>>> 61 ACTGGATCTTGTCTAAAGTCACTCTTCTAGGGGAAGTCAAAGAGACTGGGTCaGTCCtCA 121 AGATAcGATGTAAGCAGGTAAGATAGCACTATAGTAGGTCTTCTTGTCATGGTGAGTCAA 181 TAACCATTCAATATTCTTTCnACCTACTCTTTACCTGCTCAATCAAGGTAGGGGTC <<<<<<<<<<<<<<<<<<<< > Contig133_chr36_32954045_32955409 136 A G 3.772017 TaqI 1 ATTAAATGAAAACAGTGTCAGGCAATAAGATGTATTAAGTACAGTATGCCTGAGGATATA >>>>>>>>>>>>>>>>>>>>>> 61 ATATTAAACACAGATTCTGCTGTTACTATCnAAGTGGATATTAAAATAACAGTGCTACTT 121 TGAGGGTAATGCTACTTTGGAGAATATTTTCTAATAAGCTCACCaTAAAATGACggATAA <<<<<<<<<<<<<<<<<<<< > Contig53_chr37_6665763_6665919 116 C T 10.874746 BstOI 1 AGTCCTCATGTTGTACTTTACCTCACCTGAATTTACTCATCtGATAGTTGGAAATTTGTA >>>>>>>>>>>>>>>>>>>>>>>> 61 TCCATTGCCCATCtTCACCACCCCATGTCnCTGGAAACCAACAAtCTGTTCTCTGTATGa <<<<<<<<<<<<<<<<<<<<<<<<< 121 CTT > Contig2_chr37_31197993_31198256 182 C T 0.594606 1 CTCTCACCACATGGAGAATCCTGTATGTTCAGCTGTATGACGTGGGGGGAACGTCAGAGC >>>>>>>>>>>>>>>>>>>> 61 TCAGTTTCATAGCAGTCAGCTCCATGTTATGGGTTCAAgAnGAAAACAGGTGGCAGGCtT 121 GCCACAGCCTCCCTCAGGGGTGgCCTTGACAGATAAAcGT <<<<<<<<<<<<<<<<<<<< > Contig7_chr38_12217200_12218387 1163 A T > Contig265_chrX_2689247_2689484 114 C G 9.232233 1 CTTAGAGAATTCCCTGATTCACTGAGTTAAATTATTACCAAATCTGATAATAATAAAAGA >>>>>>>>>>>>>>>>>>>>>>> 61 AGTAATTACAGATCAATAATTAATCTATATGTCTGAATACATTTTAATAAGTCCnAcTCA 121 ACAATATGCTGACAAAACAATACATCTTGTCT <<<<<<<<<<<<<<<<<<<<<<< > Contig113_chrX_26287829_26288398 385 C T 0.077485 1 AAAGCCGTAACAGTCGCTAGGAGAATCATAATTTTAAGCTTTGTGTGTCCCGGGcTTGAG >>>>>>>>>>>>>>>>>>>> 61 TCCCTCAGGAGTAGTTAGATGCGGCCTTAAATTCTCcCAGTAAATTCACnTTGACGGCCT 121 ATTTTTGACCTGGGGGCACACGCTGCTATACACTCTAGCCACCTCTGATCCTCTGGCCTC 181 CTCTGTTACAATGACAGAAACGACAGAAGCATTTCTTTAAAATAAGTCCCAGTACGTGCA 241 CACAAACGTTCAGGGCAGCCTTCTCCATAAACGGCACGAAATGGC <<<<<<<<<<<<<<<<<<<< > Contig90_chrX_57430715_57431566 548 C T 0.153995 EcoRV 1 CTCATTCCCAGCTACCTCCACCTCTATACCAACCCCTAGTTCCTGTACATCCCTGCTTCT >>>>>>>>>>>>>>>>>>>> 61 ATAGGAAATCTTCCTGGTGTTGATATnATTCCCAAGGTCAGGCTGTCCTCCTAGCTCCCT 121 CTCCTCATCTGCATCAAGTCCTCCAAACTGGGCAGTAGAC <<<<<<<<<<<<<<<<<<<< > Contig133_chrX_84833782_84834125 182 G A 0.277794 1 CACCAGAGTGCAATCGAGAACCATCTGATCACAGAACCATAGAAAAGATTGCTGTACAAG >>>>>>>>>>>>>>>>>>>> 61 ACTTAGGAACTCATTCTGTTCAGGATGGAGAAGCTGATGCCCAAAAAGGGAAAGGAACTT 121 AACCAAAGTCCATACAnTATCAACTCTACACATAAAGGAAGGGAGTGGAGGGAGCAGTAA 181 GACCAGAGATATAGACCCCAGTGAGGAGGCTGTGAGCTCCTG <<<<<<<<<<<<<<<<<<<<