Mercurial > repos > miller-lab > snp_analysis_conversion

annotate test-data/snpsForSubmission.vcf @ 3:edf12470a1a6 default tip

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Bugfix from Belinda, in vcf2pgSnp.pl
author Cathy Riemer <cathy+hg@bx.psu.edu>
date Thu, 19 Mar 2015 12:06:34 -0400
parents 35c20b109be5
children
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1 ##fileformat=VCFv4.1
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2 ##fileDate=2013520
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3 ##handle=MyHandle
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4 ##batch=Test1
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5 ##reference=pb_000001.1
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6 ##INFO=<ID=VRT,Number=1,Type=Integer,Description="Variation type,1 - SNV: single nucleotide variation,2 - DIV: deletion/insertion variation,3 - HETEROZYGOUS: variable, but undefined at nucleotide level,4 - STR: short tandem repeat (microsatellite) variation, 5 - NAMED: insertion/deletion variation of named repetitive element,6 - NO VARIATON: sequence scanned for variation, but none observed,7 - MIXED: cluster contains submissions from 2 or more allelic classes (not used) ,8 - MNV: multiple nucleotide variation with all eles of common length greater than 1,9 - Exception">
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7 #CHROM POS ID REF ALT QUAL FILTER INFO
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8 Contig161_chr1_4641264_4641879 115 Contig161_chr1_4641264_4641879;115 C T 73.5 . VRT=6
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9 Contig48_chr1_10150253_10151311 11 Contig48_chr1_10150253_10151311;11 A G 94.3 . VRT=6
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10 Contig20_chr1_21313469_21313570 66 Contig20_chr1_21313469_21313570;66 C T 54.0 . VRT=6
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11 Contig86_chr1_30984450_30985684 670 Contig86_chr1_30984450_30985684;670 C T 365.0 . VRT=6
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12 Contig5_chr1_32562160_32563940 1215 Contig5_chr1_32562160_32563940;1215 G T 163.0 . VRT=6
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13 Contig110_chr1_33385093_33386888 510 Contig110_chr1_33385093_33386888;510 C T 270.0 . VRT=6
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14 Contig100_chr1_33562920_33564288 743 Contig100_chr1_33562920_33564288;743 C T 178.0 . VRT=6
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15 Contig7_chr1_37302355_37302489 97 Contig7_chr1_37302355_37302489;97 A G 59.2 . VRT=6
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16 Contig62_chr1_41880715_41882180 1078 Contig62_chr1_41880715_41882180;1078 T G 57.6 . VRT=6
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17 Contig47_chr1_48409178_48409384 37 Contig47_chr1_48409178_48409384;37 C T 134.0 . VRT=6
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18 Contig119_chr1_49647683_49650077 1618 Contig119_chr1_49647683_49650077;1618 C A 99.7 . VRT=6
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19 Contig21_chr1_60697952_60699446 307 Contig21_chr1_60697952_60699446;307 G A 51.9 . VRT=6
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20 Contig131_chr1_62319542_62320564 169 Contig131_chr1_62319542_62320564;169 C G 103.0 . VRT=6
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21 Contig14_chr1_63450425_63450680 101 Contig14_chr1_63450425_63450680;101 T A 102.0 . VRT=6
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22 Contig83_chr1_63869778_63869942 40 Contig83_chr1_63869778_63869942;40 T C 23.7 . VRT=6
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23 Contig30_chr1_64702572_64703138 178 Contig30_chr1_64702572_64703138;178 A T 117.0 . VRT=6
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24 Contig101_chr1_69868406_69868872 287 Contig101_chr1_69868406_69868872;287 G A 14.6 . VRT=6
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25 Contig35_chr1_74482577_74482791 170 Contig35_chr1_74482577_74482791;170 G A 45.4 . VRT=6
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26 Contig49_chr1_83865731_83865944 85 Contig49_chr1_83865731_83865944;85 G A 34.1 . VRT=6
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27 Contig64_chr1_87343284_87345672 163 Contig64_chr1_87343284_87345672;163 T A 3.76 . VRT=6
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28 Contig20_chr1_110679280_110679687 181 Contig20_chr1_110679280_110679687;181 C T 87.4 . VRT=6
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29 Contig129_chr1_117547123_117548666 926 Contig129_chr1_117547123_117548666;926 G A 126.0 . VRT=6
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30 Contig7_chr1_125154638_125154844 190 Contig7_chr1_125154638_125154844;190 G T 130.0 . VRT=6
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31 Contig222_chr2_9817738_9818143 220 Contig222_chr2_9817738_9818143;220 C T 888.0 . VRT=6
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32 Contig47_chr2_25470778_25471576 126 Contig47_chr2_25470778_25471576;126 G A 888.0 . VRT=6
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33 Contig10_chr2_40859744_40860534 637 Contig10_chr2_40859744_40860534;637 G A 888.0 . VRT=6
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34 Contig52_chr2_41421981_41422725 604 Contig52_chr2_41421981_41422725;604 C A 888.0 . VRT=6
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35 Contig94_chr2_43869105_43870358 220 Contig94_chr2_43869105_43870358;220 G A 888.0 . VRT=6
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36 Contig34_chr2_48444129_48444939 695 Contig34_chr2_48444129_48444939;695 C T 134.0 . VRT=6
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37 Contig6_chr2_56859179_56859956 671 Contig6_chr2_56859179_56859956;671 T C 999.9 . VRT=6
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38 Contig115_chr2_61631913_61632510 310 Contig115_chr2_61631913_61632510;310 G T 999.3 . VRT=6
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39 Contig31_chr2_67331584_67331785 39 Contig31_chr2_67331584_67331785;39 C T 999.0 . VRT=6
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40 Contig92_chr2_75906683_75907774 773 Contig92_chr2_75906683_75907774;773 T C 85.4 . VRT=6
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41 Contig163_chr2_76402959_76404830 221 Contig163_chr2_76402959_76404830;221 C T 127.0 . VRT=6
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42 Contig177_chr2_79559305_79560033 168 Contig177_chr2_79559305_79560033;168 C T 5.67 . VRT=6
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43 Contig8_chr2_82945728_82945839 61 Contig8_chr2_82945728_82945839;61 T C 223.0 . VRT=6
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44 Contig59_chr2_85243022_85243758 506 Contig59_chr2_85243022_85243758;506 G A 96.3 . VRT=6
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45 Contig56_chr3_17326225_17327548 387 Contig56_chr3_17326225_17327548;387 G C 91.2 . VRT=6
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46 Contig108_chr3_46210055_46210874 367 Contig108_chr3_46210055_46210874;367 A G 21.0 . VRT=6
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47 Contig16_chr3_47113407_47114449 322 Contig16_chr3_47113407_47114449;322 G A 105.0 . VRT=6
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48 Contig3_chr3_47564810_47565251 262 Contig3_chr3_47564810_47565251;262 T G 112.0 . VRT=6
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49 Contig35_chr3_49662401_49662929 270 Contig35_chr3_49662401_49662929;270 A T 96.1 . VRT=6
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50 Contig97_chr3_49820354_49821631 1069 Contig97_chr3_49820354_49821631;1069 G A 44.1 . VRT=6
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51 Contig1_chr3_51588422_51589409 926 Contig1_chr3_51588422_51589409;926 A G 51.0 . VRT=6
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52 Contig25_chr3_53260697_53262560 402 Contig25_chr3_53260697_53262560;402 G A 211.0 . VRT=6
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53 Contig11_chr3_53992739_53995954 2392 Contig11_chr3_53992739_53995954;2392 G A 82.4 . VRT=6
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54 Contig236_chr3_72676275_72676473 128 Contig236_chr3_72676275_72676473;128 G A 278.0 . VRT=6
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55 Contig48_chr3_74792236_74792388 63 Contig48_chr3_74792236_74792388;63 T C 111.0 . VRT=6
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56 Contig65_chr3_80727952_80728283 39 Contig65_chr3_80727952_80728283;39 T C 71.2 . VRT=6
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57 Contig53_chr3_86407941_86409349 1406 Contig53_chr3_86407941_86409349;1406 G A 86.9 . VRT=6
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58 Contig13_chr3_92409738_92412300 718 Contig13_chr3_92409738_92412300;718 A G 23.3 . VRT=6
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59 Contig134_chr4_12145648_12148225 1326 Contig134_chr4_12145648_12148225;1326 C T 164.0 . VRT=6
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60 Contig88_chr4_15557471_15557833 268 Contig88_chr4_15557471_15557833;268 A G 145.0 . VRT=6
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61 Contig53_chr4_18823968_18824478 149 Contig53_chr4_18823968_18824478;149 A G 91.3 . VRT=6
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62 Contig86_chr4_24953866_24956222 1985 Contig86_chr4_24953866_24956222;1985 C T 76.4 . VRT=6
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63 Contig19_chr4_26233601_26233991 146 Contig19_chr4_26233601_26233991;146 G C 51.6 . VRT=6
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64 Contig78_chr4_28579975_28580134 30 Contig78_chr4_28579975_28580134;30 T G 19.6 . VRT=6
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65 Contig16_chr4_30177226_30179725 621 Contig16_chr4_30177226_30179725;621 C T 88.4 . VRT=6
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66 Contig30_chr4_46196500_46197672 1045 Contig30_chr4_46196500_46197672;1045 A C 33.4 . VRT=6
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67 Contig2_chr4_47039007_47039323 158 Contig2_chr4_47039007_47039323;158 G C 35.1 . VRT=6
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68 Contig17_chr4_61310346_61311158 267 Contig17_chr4_61310346_61311158;267 C T 49.9 . VRT=6
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69 Contig26_chr4_64190783_64191295 64 Contig26_chr4_64190783_64191295;64 A G 162.0 . VRT=6
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70 Contig11_chr4_65500960_65501654 634 Contig11_chr4_65500960_65501654;634 T C 107.0 . VRT=6
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71 Contig38_chr4_67768488_67768982 113 Contig38_chr4_67768488_67768982;113 A G 102.0 . VRT=6
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72 Contig30_chr4_70978564_70979580 596 Contig30_chr4_70978564_70979580;596 A G 164.0 . VRT=6
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73 Contig72_chr4_74225793_74226492 674 Contig72_chr4_74225793_74226492;674 A G 110.0 . VRT=6
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74 Contig32_chr4_75618955_75620254 301 Contig32_chr4_75618955_75620254;301 T C 333.0 . VRT=6
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75 Contig31_chr5_4734956_4736547 1166 Contig31_chr5_4734956_4736547;1166 C T 133.0 . VRT=6
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76 Contig113_chr5_11052263_11052603 28 Contig113_chr5_11052263_11052603;28 C T 38.2 . VRT=1
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77 Contig30_chr5_15698241_15699076 396 Contig30_chr5_15698241_15699076;396 G T 76.6 . VRT=6
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78 Contig36_chr5_17709244_17710004 373 Contig36_chr5_17709244_17710004;373 T C 281.0 . VRT=6
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79 Contig13_chr5_21881138_21881562 227 Contig13_chr5_21881138_21881562;227 A G 251.0 . VRT=6
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80 Contig5_chr5_23188121_23190168 1841 Contig5_chr5_23188121_23190168;1841 C T 141.0 . VRT=6
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81 Contig6_chr5_26899813_26900498 97 Contig6_chr5_26899813_26900498;97 A C 88.6 . VRT=6
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82 Contig314_chr5_34019166_34019319 72 Contig314_chr5_34019166_34019319;72 C A 20.1 . VRT=6
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83 Contig147_chr5_38980258_38980559 221 Contig147_chr5_38980258_38980559;221 C T 40.8 . VRT=6
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84 Contig115_chr5_48119079_48120169 151 Contig115_chr5_48119079_48120169;151 C T 78.3 . VRT=6
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85 Contig45_chr5_50892738_50892968 169 Contig45_chr5_50892738_50892968;169 C A 25.8 . VRT=6
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86 Contig40_chr5_51484164_51484696 14 Contig40_chr5_51484164_51484696;14 A G 53.3 . VRT=6
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87 Contig40_chr5_51664286_51667573 861 Contig40_chr5_51664286_51667573;861 C T 148.0 . VRT=6
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88 Contig15_chr5_51889708_51891244 882 Contig15_chr5_51889708_51891244;882 A G 149.0 . VRT=6
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89 Contig143_chr5_57231364_57232010 294 Contig143_chr5_57231364_57232010;294 T C 78.5 . VRT=6
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90 Contig13_chr5_57609985_57610584 496 Contig13_chr5_57609985_57610584;496 C T 50.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
91 Contig230_chr5_58486998_58487280 227 Contig230_chr5_58486998_58487280;227 T C 192.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
92 Contig385_chr5_60122961_60123128 15 Contig385_chr5_60122961_60123128;15 C G 136.0 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
93 Contig143_chr5_65121393_65122035 558 Contig143_chr5_65121393_65122035;558 C A 127.0 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
94 Contig32_chr5_70852360_70853289 282 Contig32_chr5_70852360_70853289;282 G A 114.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
95 Contig215_chr5_70946445_70947428 363 Contig215_chr5_70946445_70947428;363 T G 28.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
96 Contig100_chr5_71189678_71190590 813 Contig100_chr5_71189678_71190590;813 C T 30.8 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
97 Contig45_chr5_76133561_76134403 388 Contig45_chr5_76133561_76134403;388 A G 103.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
98 Contig61_chr5_90202541_90204393 909 Contig61_chr5_90202541_90204393;909 C T 101.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
99 Contig111_chr6_5821219_5822519 1060 Contig111_chr6_5821219_5822519;1060 A G 68.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
100 Contig220_chr6_10671338_10672441 999 Contig220_chr6_10671338_10672441;999 T C 36.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
101 Contig226_chr6_17361986_17362884 418 Contig226_chr6_17361986_17362884;418 G C 251.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
102 Contig380_chr6_18173971_18174169 180 Contig380_chr6_18173971_18174169;180 C T 4.87 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
103 Contig51_chr6_20231207_20231785 161 Contig51_chr6_20231207_20231785;161 A G 70.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
104 Contig102_chr6_30271329_30271577 39 Contig102_chr6_30271329_30271577;39 T G 139.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
105 Contig217_chr6_31393824_31394218 97 Contig217_chr6_31393824_31394218;97 G A 115.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
106 Contig186_chr6_31928098_31928245 73 Contig186_chr6_31928098_31928245;73 G A 117.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
107 Contig52_chr6_33188498_33188724 123 Contig52_chr6_33188498_33188724;123 G A 59.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
108 Contig102_chr6_38743009_38743435 290 Contig102_chr6_38743009_38743435;290 A G 178.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
109 Contig81_chr6_49018353_49019532 179 Contig81_chr6_49018353_49019532;179 C A 72.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
110 Contig112_chr6_51024554_51024851 100 Contig112_chr6_51024554_51024851;100 A G 121.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
111 Contig40_chr6_51412751_51413807 227 Contig40_chr6_51412751_51413807;227 T C 94.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
112 Contig47_chr6_69073222_69074767 1315 Contig47_chr6_69073222_69074767;1315 T C 212.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
113 Contig30_chr6_74848932_74849059 57 Contig30_chr6_74848932_74849059;57 C G 46.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
114 Contig84_chr7_6648683_6650255 1297 Contig84_chr7_6648683_6650255;1297 G A 110.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
115 Contig239_chr7_13007379_13007700 275 Contig239_chr7_13007379_13007700;275 A G 39.8 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
116 Contig119_chr7_18310707_18310948 23 Contig119_chr7_18310707_18310948;23 A T 133.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
117 Contig93_chr7_18513377_18513741 173 Contig93_chr7_18513377_18513741;173 T C 130.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
118 Contig133_chr7_19603333_19603776 414 Contig133_chr7_19603333_19603776;414 C G 31.9 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
119 Contig132_chr7_20426224_20428145 1815 Contig132_chr7_20426224_20428145;1815 A G 28.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
120 Contig206_chr7_26281823_26282074 103 Contig206_chr7_26281823_26282074;103 C A 101.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
121 Contig116_chr7_45858984_45859111 38 Contig116_chr7_45858984_45859111;38 T C 73.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
122 Contig38_chr7_50681997_50682600 42 Contig38_chr7_50681997_50682600;42 T C 92.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
123 Contig55_chr7_53147505_53148974 894 Contig55_chr7_53147505_53148974;894 A G 68.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
124 Contig4_chr7_53685534_53688206 1709 Contig4_chr7_53685534_53688206;1709 C G 76.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
125 Contig61_chr7_55832923_55834065 506 Contig61_chr7_55832923_55834065;506 T C 185.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
126 Contig91_chr8_12804505_12805470 409 Contig91_chr8_12804505_12805470;409 C A 111.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
127 Contig30_chr8_17147743_17147923 13 Contig30_chr8_17147743_17147923;13 G A 105.0 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
128 Contig8_chr8_27811135_27812620 333 Contig8_chr8_27811135_27812620;333 C T 37.9 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
129 Contig66_chr8_28273102_28273660 175 Contig66_chr8_28273102_28273660;175 G C 81.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
130 Contig84_chr8_31375511_31376456 443 Contig84_chr8_31375511_31376456;443 T C 125.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
131 Contig18_chr8_32575859_32577431 264 Contig18_chr8_32575859_32577431;264 T C 151.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
132 Contig54_chr8_40913908_40916451 1275 Contig54_chr8_40913908_40916451;1275 G A 175.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
133 Contig93_chr8_44658786_44659075 180 Contig93_chr8_44658786_44659075;180 T G 55.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
134 Contig17_chr8_57490059_57490498 69 Contig17_chr8_57490059_57490498;69 G T 97.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
135 Contig66_chr8_58562376_58563446 345 Contig66_chr8_58562376_58563446;345 C G 5.74 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
136 Contig44_chr8_71186368_71188207 1455 Contig44_chr8_71186368_71188207;1455 G T 147.0 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
137 Contig73_chr9_29451535_29452248 616 Contig73_chr9_29451535_29452248;616 A G 24.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
138 Contig96_chr9_39008495_39009278 215 Contig96_chr9_39008495_39009278;215 A C 98.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
139 Contig22_chr10_15505382_15505589 172 Contig22_chr10_15505382_15505589;172 T C 38.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
140 Contig69_chr10_40547265_40548153 371 Contig69_chr10_40547265_40548153;371 G A 58.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
141 Contig63_chr10_42716594_42719945 1018 Contig63_chr10_42716594_42719945;1018 A G 88.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
142 Contig22_chr10_43255307_43255570 81 Contig22_chr10_43255307_43255570;81 C A 37.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
143 Contig9_chr10_51475063_51476054 770 Contig9_chr10_51475063_51476054;770 C T 57.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
144 Contig42_chr10_53816543_53818392 1642 Contig42_chr10_53816543_53818392;1642 G A 27.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
145 Contig36_chr10_53992615_53993741 229 Contig36_chr10_53992615_53993741;229 G C 86.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
146 Contig20_chr10_58141129_58141750 575 Contig20_chr10_58141129_58141750;575 C T 46.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
147 Contig26_chr10_59510973_59511899 146 Contig26_chr10_59510973_59511899;146 C A 29.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
148 Contig72_chr11_7142765_7143772 146 Contig72_chr11_7142765_7143772;146 G A 152.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
149 Contig103_chr11_8844784_8845095 214 Contig103_chr11_8844784_8845095;214 T G 135.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
150 Contig9_chr11_9904571_9905983 1284 Contig9_chr11_9904571_9905983;1284 C T 151.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
151 Contig35_chr11_22459883_22460855 714 Contig35_chr11_22459883_22460855;714 T G 54.9 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
152 Contig7_chr11_40017076_40017630 352 Contig7_chr11_40017076_40017630;352 C T 46.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
153 Contig108_chr11_42953408_42955156 367 Contig108_chr11_42953408_42955156;367 A G 89.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
154 Contig82_chr11_43490732_43490862 60 Contig82_chr11_43490732_43490862;60 C T 47.3 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
155 Contig16_chr11_53408448_53408790 187 Contig16_chr11_53408448_53408790;187 A G 153.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
156 Contig21_chr12_18403415_18404381 586 Contig21_chr12_18403415_18404381;586 G T 34.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
157 Contig33_chr12_19804073_19804529 178 Contig33_chr12_19804073_19804529;178 T C 69.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
158 Contig41_chr12_25565452_25566993 475 Contig41_chr12_25565452_25566993;475 G T 6.29 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
159 Contig9_chr12_27204351_27204696 239 Contig9_chr12_27204351_27204696;239 A G 145.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
160 Contig45_chr12_30548282_30550498 448 Contig45_chr12_30548282_30550498;448 C T 124.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
161 Contig46_chr12_35571846_35572563 58 Contig46_chr12_35571846_35572563;58 G C 83.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
162 Contig28_chr12_42075871_42076044 136 Contig28_chr12_42075871_42076044;136 G A 134.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
163 Contig16_chr12_42386141_42387454 194 Contig16_chr12_42386141_42387454;194 A G 161.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
164 Contig42_chr12_44424628_44425829 255 Contig42_chr12_44424628_44425829;255 A G 84.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
165 Contig10_chr12_44447953_44449698 63 Contig10_chr12_44447953_44449698;63 C T 105.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
166 Contig5_chr12_53880670_53882675 1221 Contig5_chr12_53880670_53882675;1221 A C 99.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
167 Contig86_chr12_56715356_56716464 818 Contig86_chr12_56715356_56716464;818 T C 166.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
168 Contig3_chr12_65021967_65024097 238 Contig3_chr12_65021967_65024097;238 T G 92.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
169 Contig43_chr12_66499742_66500010 121 Contig43_chr12_66499742_66500010;121 G T 41.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
170 Contig14_chr12_71364692_71365311 20 Contig14_chr12_71364692_71365311;20 A C 103.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
171 Contig37_chr13_15910164_15910426 245 Contig37_chr13_15910164_15910426;245 G A 32.9 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
172 Contig107_chr13_26045881_26046290 341 Contig107_chr13_26045881_26046290;341 C G 81.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
173 Contig251_chr13_28498333_28501066 864 Contig251_chr13_28498333_28501066;864 T G 296.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
174 Contig154_chr13_36777857_36778736 356 Contig154_chr13_36777857_36778736;356 G A 95.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
175 Contig37_chr13_42529793_42530857 150 Contig37_chr13_42529793_42530857;150 G T 192.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
176 Contig47_chr13_47045833_47046626 257 Contig47_chr13_47045833_47046626;257 A C 28.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
177 Contig42_chr13_47730018_47730856 254 Contig42_chr13_47730018_47730856;254 A G 75.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
178 Contig55_chr13_53467708_53468101 221 Contig55_chr13_53467708_53468101;221 T G 132.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
179 Contig49_chr13_55103679_55105532 503 Contig49_chr13_55103679_55105532;503 G A 76.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
180 Contig42_chr13_64785759_64786045 14 Contig42_chr13_64785759_64786045;14 C G 22.8 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
181 Contig66_chr13_66021813_66022244 319 Contig66_chr13_66021813_66022244;319 C T 125.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
182 Contig48_chr14_11839435_11843272 3014 Contig48_chr14_11839435_11843272;3014 A G 163.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
183 Contig9_chr14_23353717_23354432 80 Contig9_chr14_23353717_23354432;80 G A 61.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
184 Contig14_chr14_24131180_24133488 1633 Contig14_chr14_24131180_24133488;1633 G A 131.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
185 Contig28_chr14_26905747_26909514 975 Contig28_chr14_26905747_26909514;975 G C 3.13 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
186 Contig14_chr14_29616948_29618316 109 Contig14_chr14_29616948_29618316;109 G A 80.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
187 Contig24_chr14_29728478_29728839 242 Contig24_chr14_29728478_29728839;242 T A 107.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
188 Contig76_chr14_30028102_30029179 1046 Contig76_chr14_30028102_30029179;1046 C T 38.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
189 Contig115_chr14_31417207_31417574 259 Contig115_chr14_31417207_31417574;259 A G 12.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
190 Contig70_chr14_46653662_46653790 111 Contig70_chr14_46653662_46653790;111 G A 46.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
191 Contig43_chr14_49991855_49993511 918 Contig43_chr14_49991855_49993511;918 A G 112.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
192 Contig64_chr14_56768376_56768902 473 Contig64_chr14_56768376_56768902;473 C T 29.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
193 Contig60_chr15_18493036_18494316 150 Contig60_chr15_18493036_18494316;150 G A 92.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
194 Contig213_chr15_19567788_19568626 196 Contig213_chr15_19567788_19568626;196 A C 13.9 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
195 Contig59_chr15_22138344_22138535 120 Contig59_chr15_22138344_22138535;120 G C 142.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
196 Contig112_chr15_26772864_26773267 374 Contig112_chr15_26772864_26773267;374 C T 21.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
197 Contig24_chr15_26894765_26895003 155 Contig24_chr15_26894765_26895003;155 G A 87.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
198 Contig2_chr15_33944796_33947182 1860 Contig2_chr15_33944796_33947182;1860 G A 99.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
199 Contig73_chr15_34690052_34691332 714 Contig73_chr15_34690052_34691332;714 T C 130.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
200 Contig68_chr15_37747190_37747426 126 Contig68_chr15_37747190_37747426;126 G A 130.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
201 Contig35_chr15_41400484_41400672 160 Contig35_chr15_41400484_41400672;160 A C 143.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
202 Contig104_chr15_45106954_45107158 70 Contig104_chr15_45106954_45107158;70 A T 64.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
203 Contig119_chr16_6160274_6160477 180 Contig119_chr16_6160274_6160477;180 G A 54.8 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
204 Contig126_chr16_10611887_10612152 150 Contig126_chr16_10611887_10612152;150 G T 145.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
205 Contig114_chr16_12565220_12565676 10 Contig114_chr16_12565220_12565676;10 G A 134.0 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
206 Contig43_chr16_20200090_20200514 70 Contig43_chr16_20200090_20200514;70 A G 58.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
207 Contig60_chr16_28079136_28080263 588 Contig60_chr16_28079136_28080263;588 T G 157.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
208 Contig70_chr16_33758668_33759655 104 Contig70_chr16_33758668_33759655;104 A T 58.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
209 Contig66_chr16_37935682_37935831 116 Contig66_chr16_37935682_37935831;116 T C 99.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
210 Contig16_chr16_40451506_40451643 84 Contig16_chr16_40451506_40451643;84 A G 59.8 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
211 Contig53_chr16_49888293_49888587 260 Contig53_chr16_49888293_49888587;260 G A 108.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
212 Contig31_chr17_12128267_12129637 205 Contig31_chr17_12128267_12129637;205 G A 90.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
213 Contig50_chr17_12247973_12249183 889 Contig50_chr17_12247973_12249183;889 G T 47.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
214 Contig1_chr17_12979232_12980380 808 Contig1_chr17_12979232_12980380;808 G T 12.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
215 Contig63_chr17_14186372_14186928 54 Contig63_chr17_14186372_14186928;54 C T 70.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
216 Contig42_chr17_23434859_23438330 2100 Contig42_chr17_23434859_23438330;2100 C T 39.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
217 Contig63_chr17_23796320_23796814 220 Contig63_chr17_23796320_23796814;220 A G 54.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
218 Contig76_chr17_24107434_24107834 316 Contig76_chr17_24107434_24107834;316 T C 141.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
219 Contig99_chr17_26021506_26022200 505 Contig99_chr17_26021506_26022200;505 C T 88.8 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
220 Contig59_chr17_26790302_26795045 287 Contig59_chr17_26790302_26795045;287 C T 45.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
221 Contig99_chr17_27018324_27019378 446 Contig99_chr17_27018324_27019378;446 G A 31.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
222 Contig125_chr17_27739115_27739410 63 Contig125_chr17_27739115_27739410;63 G A 107.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
223 Contig115_chr17_37489899_37490101 159 Contig115_chr17_37489899_37490101;159 G A 62.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
224 Contig180_chr17_45154356_45154925 524 Contig180_chr17_45154356_45154925;524 A G 146.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
225 Contig61_chr17_48221795_48223545 1404 Contig61_chr17_48221795_48223545;1404 T A 177.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
226 Contig27_chr17_61713766_61716585 1056 Contig27_chr17_61713766_61716585;1056 G C 40.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
227 Contig229_chr18_3706523_3708577 1076 Contig229_chr18_3706523_3708577;1076 A G 83.9 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
228 Contig24_chr18_14049894_14050480 24 Contig24_chr18_14049894_14050480;24 A G 123.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
229 Contig30_chr18_18771753_18772121 39 Contig30_chr18_18771753_18772121;39 C G 48.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
230 Contig123_chr18_19916160_19916379 116 Contig123_chr18_19916160_19916379;116 G A 79.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
231 Contig82_chr18_27305489_27306229 566 Contig82_chr18_27305489_27306229;566 C T 49.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
232 Contig71_chr18_34324706_34326687 136 Contig71_chr18_34324706_34326687;136 G A 151.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
233 Contig16_chr18_34672093_34673044 538 Contig16_chr18_34672093_34673044;538 T C 58.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
234 Contig96_chr18_38492535_38493333 624 Contig96_chr18_38492535_38493333;624 G A 119.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
235 Contig226_chr18_47753756_47754666 427 Contig226_chr18_47753756_47754666;427 T C 21.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
236 Contig170_chr18_49411558_49412230 94 Contig170_chr18_49411558_49412230;94 C A 74.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
237 Contig192_chr18_49419342_49420737 1058 Contig192_chr18_49419342_49420737;1058 C T 42.8 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
238 Contig64_chr18_55979770_55980315 49 Contig64_chr18_55979770_55980315;49 G A 89.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
239 Contig20_chr18_58130301_58130735 112 Contig20_chr18_58130301_58130735;112 A G 74.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
240 Contig146_chr19_5221790_5223013 143 Contig146_chr19_5221790_5223013;143 A G 114.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
241 Contig13_chr19_7739961_7740118 26 Contig13_chr19_7739961_7740118;26 C G 220.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
242 Contig67_chr19_12398520_12399367 499 Contig67_chr19_12398520_12399367;499 C T 161.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
243 Contig66_chr19_16285672_16287223 996 Contig66_chr19_16285672_16287223;996 C T 190.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
244 Contig129_chr19_25541958_25542221 202 Contig129_chr19_25541958_25542221;202 T C 68.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
245 Contig152_chr19_34274440_34275622 1072 Contig152_chr19_34274440_34275622;1072 C T 48.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
246 Contig29_chr19_37339947_37341911 1692 Contig29_chr19_37339947_37341911;1692 C T 211.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
247 Contig39_chr19_47709708_47711327 444 Contig39_chr19_47709708_47711327;444 C T 36.8 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
248 Contig60_chr19_54013816_54014398 281 Contig60_chr19_54013816_54014398;281 A G 138.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
249 Contig251_chr19_56559098_56559626 452 Contig251_chr19_56559098_56559626;452 T C 3.36 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
250 Contig50_chr20_12138509_12141975 3206 Contig50_chr20_12138509_12141975;3206 C A 248.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
251 Contig36_chr20_32631363_32632049 176 Contig36_chr20_32631363_32632049;176 G A 24.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
252 Contig39_chr20_36316398_36316498 57 Contig39_chr20_36316398_36316498;57 C T 30.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
253 Contig32_chr20_36468058_36468869 66 Contig32_chr20_36468058_36468869;66 C T 40.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
254 Contig24_chr20_38203888_38204900 834 Contig24_chr20_38203888_38204900;834 C T 132.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
255 Contig79_chr20_44263127_44264103 456 Contig79_chr20_44263127_44264103;456 G T 31.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
256 Contig26_chr20_45878482_45878787 197 Contig26_chr20_45878482_45878787;197 A G 160.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
257 Contig119_chr20_46550670_46551383 609 Contig119_chr20_46550670_46551383;609 G A 139.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
258 Contig50_chr21_4178523_4178687 121 Contig50_chr21_4178523_4178687;121 G A 362.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
259 Contig103_chr21_10177255_10177765 121 Contig103_chr21_10177255_10177765;121 G A 125.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
260 Contig1_chr21_10805534_10806399 766 Contig1_chr21_10805534_10806399;766 A G 146.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
261 Contig46_chr21_21029492_21030645 443 Contig46_chr21_21029492_21030645;443 C T 5.37 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
262 Contig129_chr21_31045749_31046924 381 Contig129_chr21_31045749_31046924;381 A G 129.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
263 Contig23_chr21_31651123_31651986 840 Contig23_chr21_31651123_31651986;840 C T 71.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
264 Contig64_chr21_43341847_43342031 84 Contig64_chr21_43341847_43342031;84 T C 114.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
265 Contig60_chr21_43475347_43475824 175 Contig60_chr21_43475347_43475824;175 C T 8.05 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
266 Contig64_chr21_45377513_45377872 19 Contig64_chr21_45377513_45377872;19 C T 60.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
267 Contig159_chr22_7896450_7896974 109 Contig159_chr22_7896450_7896974;109 G C 151.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
268 Contig46_chr22_9416920_9417467 381 Contig46_chr22_9416920_9417467;381 G A 145.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
269 Contig86_chr22_9440787_9441725 713 Contig86_chr22_9440787_9441725;713 T G 119.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
270 Contig16_chr22_15636960_15637372 236 Contig16_chr22_15636960_15637372;236 A C 9.79 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
271 Contig4_chr22_16114310_16114546 128 Contig4_chr22_16114310_16114546;128 G C 101.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
272 Contig23_chr22_34612023_34612568 167 Contig23_chr22_34612023_34612568;167 C G 92.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
273 Contig4_chr22_38252245_38253712 799 Contig4_chr22_38252245_38253712;799 A C 159.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
274 Contig122_chr22_48412466_48414788 1888 Contig122_chr22_48412466_48414788;1888 C T 125.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
275 Contig77_chr22_49764414_49764875 353 Contig77_chr22_49764414_49764875;353 C A 148.0 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
276 Contig26_chr22_57817664_57819633 1453 Contig26_chr22_57817664_57819633;1453 A G 150.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
277 Contig348_chr22_62406104_62406495 189 Contig348_chr22_62406104_62406495;189 C A 134.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
278 Contig133_chr23_3525134_3526502 1223 Contig133_chr23_3525134_3526502;1223 A G 201.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
279 Contig111_chr23_7058063_7058181 107 Contig111_chr23_7058063_7058181;107 G A 108.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
280 Contig79_chr23_7844129_7844837 110 Contig79_chr23_7844129_7844837;110 C A 141.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
281 Contig38_chr23_9201002_9201725 597 Contig38_chr23_9201002_9201725;597 C T 155.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
282 Contig33_chr23_20672540_20674320 347 Contig33_chr23_20672540_20674320;347 T A 91.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
283 Contig35_chr23_28447813_28449115 70 Contig35_chr23_28447813_28449115;70 T A 21.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
284 Contig51_chr23_30590939_30591162 140 Contig51_chr23_30590939_30591162;140 C T 142.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
285 Contig57_chr23_32216351_32216721 179 Contig57_chr23_32216351_32216721;179 T G 143.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
286 Contig93_chr23_35744841_35745791 40 Contig93_chr23_35744841_35745791;40 A T 30.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
287 Contig99_chr23_42543966_42544147 14 Contig99_chr23_42543966_42544147;14 G A 357.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
288 Contig32_chr23_48285289_48286638 186 Contig32_chr23_48285289_48286638;186 T C 176.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
289 Contig50_chr24_22515247_22516072 761 Contig50_chr24_22515247_22516072;761 C T 243.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
290 Contig92_chr24_28935897_28936321 13 Contig92_chr24_28935897_28936321;13 G A 47.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
291 Contig84_chr24_29196623_29199644 466 Contig84_chr24_29196623_29199644;466 C T 126.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
292 Contig35_chr24_30150986_30151507 492 Contig35_chr24_30150986_30151507;492 A C 114.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
293 Contig61_chr24_30465488_30465834 149 Contig61_chr24_30465488_30465834;149 G T 68.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
294 Contig145_chr24_34778364_34778898 163 Contig145_chr24_34778364_34778898;163 T C 372.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
295 Contig34_chr24_36147443_36150244 2679 Contig34_chr24_36147443_36150244;2679 C T 140.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
296 Contig164_chr24_46598127_46599206 84 Contig164_chr24_46598127_46599206;84 C T 105.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
297 Contig144_chr25_4011170_4013134 541 Contig144_chr25_4011170_4013134;541 A G 160.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
298 Contig81_chr25_6103472_6104760 699 Contig81_chr25_6103472_6104760;699 G A 378.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
299 Contig152_chr25_7486442_7487609 75 Contig152_chr25_7486442_7487609;75 A G 11.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
300 Contig24_chr25_7695778_7698612 2714 Contig24_chr25_7695778_7698612;2714 C T 130.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
301 Contig89_chr25_8635170_8636009 586 Contig89_chr25_8635170_8636009;586 G C 209.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
302 Contig77_chr25_10796299_10796481 2 Contig77_chr25_10796299_10796481;2 T C 17.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
303 Contig73_chr25_14177327_14177474 125 Contig73_chr25_14177327_14177474;125 A C 6.85 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
304 Contig59_chr25_18196776_18197707 785 Contig59_chr25_18196776_18197707;785 G A 112.0 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
305 Contig103_chr25_38891221_38892140 407 Contig103_chr25_38891221_38892140;407 G A 131.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
306 Contig84_chr25_42407960_42408708 55 Contig84_chr25_42407960_42408708;55 C T 119.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
307 Contig73_chr25_43562500_43564110 955 Contig73_chr25_43562500_43564110;955 T C 52.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
308 Contig37_chr25_51074433_51074885 170 Contig37_chr25_51074433_51074885;170 A G 102.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
309 Contig204_chr26_4311195_4311778 170 Contig204_chr26_4311195_4311778;170 C T 16.9 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
310 Contig122_chr26_7622321_7623491 106 Contig122_chr26_7622321_7623491;106 C G 139.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
311 Contig11_chr26_11062142_11062902 707 Contig11_chr26_11062142_11062902;707 C A 108.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
312 Contig133_chr26_17695661_17696368 39 Contig133_chr26_17695661_17696368;39 T G 98.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
313 Contig157_chr26_23894107_23895229 25 Contig157_chr26_23894107_23895229;25 C T 50.2 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
314 Contig146_chr26_26622638_26623906 574 Contig146_chr26_26622638_26623906;574 G A 186.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
315 Contig8_chr26_27834126_27834326 140 Contig8_chr26_27834126_27834326;140 G A 41.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
316 Contig78_chr26_31128839_31129005 123 Contig78_chr26_31128839_31129005;123 T C 145.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
317 Contig28_chr26_32935355_32935833 289 Contig28_chr26_32935355_32935833;289 T C 77.9 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
318 Contig36_chr26_36606876_36607240 115 Contig36_chr26_36606876_36607240;115 A T 139.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
319 Contig135_chr27_6853874_6854079 158 Contig135_chr27_6853874_6854079;158 C T 116.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
320 Contig47_chr27_11777710_11777915 25 Contig47_chr27_11777710_11777915;25 A G 67.3 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
321 Contig23_chr27_14633002_14633153 23 Contig23_chr27_14633002_14633153;23 G A 128.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
322 Contig31_chr27_14987233_14988055 630 Contig31_chr27_14987233_14988055;630 A G 48.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
323 Contig29_chr27_15428166_15429413 380 Contig29_chr27_15428166_15429413;380 T C 140.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
324 Contig31_chr27_19519489_19520891 129 Contig31_chr27_19519489_19520891;129 G T 14.9 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
325 Contig64_chr27_34654435_34654621 132 Contig64_chr27_34654435_34654621;132 C A 115.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
326 Contig35_chr27_40596169_40596445 20 Contig35_chr27_40596169_40596445;20 G C 133.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
327 Contig85_chr27_45471750_45472022 211 Contig85_chr27_45471750_45472022;211 G A 53.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
328 Contig131_chr28_6481806_6483783 138 Contig131_chr28_6481806_6483783;138 C T 36.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
329 Contig141_chr28_10027332_10028242 780 Contig141_chr28_10027332_10028242;780 T G 74.8 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
330 Contig144_chr28_15468203_15470548 743 Contig144_chr28_15468203_15470548;743 G A 20.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
331 Contig47_chr28_21311718_21312366 541 Contig47_chr28_21311718_21312366;541 G A 116.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
332 Contig60_chr28_30197166_30197364 92 Contig60_chr28_30197166_30197364;92 T C 164.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
333 Contig201_chr28_36339953_36341322 260 Contig201_chr28_36339953_36341322;260 C T 6.36 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
334 Contig175_chr28_36441165_36441915 68 Contig175_chr28_36441165_36441915;68 T C 3.83 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
335 Contig29_chr29_4726399_4727143 559 Contig29_chr29_4726399_4727143;559 A T 163.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
336 Contig48_chr29_13129286_13130137 232 Contig48_chr29_13129286_13130137;232 A G 92.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
337 Contig64_chr29_15736891_15737257 344 Contig64_chr29_15736891_15737257;344 T C 40.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
338 Contig33_chr29_17000374_17000921 71 Contig33_chr29_17000374_17000921;71 C T 48.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
339 Contig34_chr29_17581796_17584016 2105 Contig34_chr29_17581796_17584016;2105 C T 126.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
340 Contig19_chr29_20976080_20977761 1007 Contig19_chr29_20976080_20977761;1007 G A 115.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
341 Contig51_chr29_21149853_21150467 266 Contig51_chr29_21149853_21150467;266 C T 146.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
342 Contig1_chr30_5992217_5993068 106 Contig1_chr30_5992217_5993068;106 C T 129.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
343 Contig1_chr30_8232878_8233406 402 Contig1_chr30_8232878_8233406;402 C T 127.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
344 Contig108_chr30_9436961_9437520 546 Contig108_chr30_9436961_9437520;546 C T 39.8 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
345 Contig165_chr30_25804389_25804926 190 Contig165_chr30_25804389_25804926;190 T C 126.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
346 Contig193_chr30_27495616_27496125 434 Contig193_chr30_27495616_27496125;434 C A 234.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
347 Contig114_chr30_33636712_33637208 34 Contig114_chr30_33636712_33637208;34 C T 142.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
348 Contig38_chr31_5164423_5166573 2074 Contig38_chr31_5164423_5166573;2074 C T 134.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
349 Contig6_chr31_9649308_9650149 431 Contig6_chr31_9649308_9650149;431 G T 162.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
350 Contig85_chr31_12242872_12245082 38 Contig85_chr31_12242872_12245082;38 G C 92.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
351 Contig7_chr31_12384974_12386400 305 Contig7_chr31_12384974_12386400;305 C T 69.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
352 Contig90_chr31_17267583_17267778 81 Contig90_chr31_17267583_17267778;81 C A 143.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
353 Contig68_chr31_20000241_20000597 215 Contig68_chr31_20000241_20000597;215 C T 131.0 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
354 Contig137_chr31_23357653_23358568 885 Contig137_chr31_23357653_23358568;885 G A 119.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
355 Contig17_chr31_26433828_26434459 498 Contig17_chr31_26433828_26434459;498 T C 9.79 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
356 Contig9_chr32_19479532_19479735 12 Contig9_chr32_19479532_19479735;12 A G 20.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
357 Contig30_chr32_25902721_25905783 208 Contig30_chr32_25902721_25905783;208 C G 162.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
358 Contig7_chr32_27789513_27789926 20 Contig7_chr32_27789513_27789926;20 G A 7.19 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
359 Contig42_chr32_38900713_38901320 320 Contig42_chr32_38900713_38901320;320 A G 134.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
360 Contig18_chr33_22207246_22209159 1363 Contig18_chr33_22207246_22209159;1363 G T 51.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
361 Contig104_chr33_22483642_22484187 424 Contig104_chr33_22483642_22484187;424 C T 140.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
362 Contig170_chr33_26189421_26189940 292 Contig170_chr33_26189421_26189940;292 T C 98.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
363 Contig113_chr34_13341080_13341643 236 Contig113_chr34_13341080_13341643;236 C T 90.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
364 Contig405_chr34_14415672_14415979 59 Contig405_chr34_14415672_14415979;59 A G 36.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
365 Contig21_chr34_16422980_16425681 2009 Contig21_chr34_16422980_16425681;2009 G A 19.4 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
366 Contig41_chr34_16544482_16545449 46 Contig41_chr34_16544482_16545449;46 T C 102.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
367 Contig8_chr34_18474513_18475673 1122 Contig8_chr34_18474513_18475673;1122 C A 129.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
368 Contig152_chr34_31794848_31795540 242 Contig152_chr34_31794848_31795540;242 G A 93.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
369 Contig28_chr34_41708848_41712034 1381 Contig28_chr34_41708848_41712034;1381 A G 78.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
370 Contig85_chr34_42798284_42800584 1845 Contig85_chr34_42798284_42800584;1845 C T 171.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
371 Contig47_chr35_3666773_3667898 348 Contig47_chr35_3666773_3667898;348 G T 124.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
372 Contig195_chr35_15722500_15722741 205 Contig195_chr35_15722500_15722741;205 G A 4.08 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
373 Contig101_chr35_19513178_19513697 62 Contig101_chr35_19513178_19513697;62 C T 112.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
374 Contig19_chr35_23887144_23888282 90 Contig19_chr35_23887144_23888282;90 C A 10.1 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
375 Contig47_chr35_24382042_24382526 33 Contig47_chr35_24382042_24382526;33 G A 87.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
376 Contig77_chr35_24796947_24797172 65 Contig77_chr35_24796947_24797172;65 A G 52.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
377 Contig74_chr35_25394343_25394813 303 Contig74_chr35_25394343_25394813;303 A T 221.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
378 Contig5_chr36_4562983_4563634 343 Contig5_chr36_4562983_4563634;343 C T 151.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
379 Contig75_chr36_7885319_7885588 53 Contig75_chr36_7885319_7885588;53 G A 25.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
380 Contig184_chr36_18956191_18958552 187 Contig184_chr36_18956191_18958552;187 A G 11.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
381 Contig12_chr36_21557176_21557828 513 Contig12_chr36_21557176_21557828;513 T A 159.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
382 Contig2_chr36_22436067_22436794 653 Contig2_chr36_22436067_22436794;653 C T 73.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
383 Contig133_chr36_32954045_32955409 136 Contig133_chr36_32954045_32955409;136 A G 116.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
384 Contig53_chr37_6665763_6665919 116 Contig53_chr37_6665763_6665919;116 C T 111.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
385 Contig42_chr37_9589176_9591269 252 Contig42_chr37_9589176_9591269;252 G A 25.1 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
386 Contig2_chr37_17134963_17136513 1140 Contig2_chr37_17134963_17136513;1140 A C 158.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
387 Contig18_chr37_17147806_17149851 291 Contig18_chr37_17147806_17149851;291 T G 112.0 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
388 Contig64_chr37_17606895_17607534 565 Contig64_chr37_17606895_17607534;565 C T 30.2 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
389 Contig126_chr37_21587881_21590621 373 Contig126_chr37_21587881_21590621;373 G T 132.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
390 Contig2_chr37_31197993_31198256 182 Contig2_chr37_31197993_31198256;182 C T 39.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
391 Contig46_chr37_31852376_31853555 825 Contig46_chr37_31852376_31853555;825 A G 111.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
392 Contig7_chr38_12217200_12218387 1163 Contig7_chr38_12217200_12218387;1163 A T 44.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
393 Contig15_chr38_12282020_12282253 150 Contig15_chr38_12282020_12282253;150 C T 156.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
394 Contig4_chr38_14807432_14807747 275 Contig4_chr38_14807432_14807747;275 A G 36.5 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
395 Contig6_chr38_16185744_16186110 325 Contig6_chr38_16185744_16186110;325 A G 74.9 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
396 Contig265_chrX_2689247_2689484 114 Contig265_chrX_2689247_2689484;114 C G 103.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
397 Contig122_chrX_6026976_6027327 330 Contig122_chrX_6026976_6027327;330 C T 79.4 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
398 Contig15_chrX_15659909_15660340 15 Contig15_chrX_15659909_15660340;15 A C 14.9 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
399 Contig12_chrX_23243561_23244412 479 Contig12_chrX_23243561_23244412;479 C G 67.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
400 Contig113_chrX_26287829_26288398 385 Contig113_chrX_26287829_26288398;385 C T 59.6 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
401 Contig186_chrX_29118735_29118939 192 Contig186_chrX_29118735_29118939;192 G A 7.01 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
402 Contig237_chrX_31256648_31257654 165 Contig237_chrX_31256648_31257654;165 T A 246.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
403 Contig25_chrX_40729418_40730089 332 Contig25_chrX_40729418_40730089;332 C T 31.2 . VRT=1
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
404 Contig90_chrX_57430715_57431566 548 Contig90_chrX_57430715_57431566;548 C T 116.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
405 Contig133_chrX_84833782_84834125 182 Contig133_chrX_84833782_84834125;182 G A 69.7 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
406 Contig129_chrX_90586053_90586467 135 Contig129_chrX_90586053_90586467;135 A T 120.0 . VRT=6
35c20b109be5 Retrying upload with "bare" tarball (i.e. one without a top containing directory).
cathy
parents:
diff changeset
407 Contig125_chrX_93319363_93320877 349 Contig125_chrX_93319363_93320877;349 A C 145.0 . VRT=6