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comparison vcf2pgSnp.xml @ 3:edf12470a1a6 default tip

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Bugfix from Belinda, in vcf2pgSnp.pl
author Cathy Riemer <cathy+hg@bx.psu.edu>
date Thu, 19 Mar 2015 12:06:34 -0400
parents 35c20b109be5
children
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2:35c20b109be5 3:edf12470a1a6
1 <tool id="vcf2pgSnp" name="VCF to pgSnp" version="1.0.0" hidden="false"> 1 <tool id="vcf2pgSnp" name="VCF to pgSnp" version="1.1.0" hidden="false">
2 <description>: Convert from VCF to pgSnp format</description> 2 <description>: Convert from VCF to pgSnp format</description>
3 <command interpreter="perl"> 3 <command interpreter="perl">
4 #if $inType.how == "all" #vcf2pgSnp.pl all $input1 > $out_file1 4 #if $inType.how == "all" #vcf2pgSnp.pl all $input1 > $out_file1
5 #else #vcf2pgSnp.pl $inType.ind_column $input1 > $out_file1 5 #else #vcf2pgSnp.pl $inType.ind_column $input1 > $out_file1
6 #end if 6 #end if