Mercurial > repos > mingchen0919 > aurora_deseq2
comparison build-and-run-job-scripts.sh @ 0:55d2db17c67c draft
planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
| author | mingchen0919 |
|---|---|
| date | Fri, 14 Dec 2018 00:21:26 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:55d2db17c67c |
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| 1 # run job scripts within the tool outputs directory | |
| 2 cd ${REPORT_FILES_PATH} | |
| 3 | |
| 4 #========== build and run job 1 script ============ | |
| 5 cat >job-1-script.sh <<EOF | |
| 6 #------------ BELOW IS WHERE YOU WRITE YOUR OWN SHELL SCRIPT -------------- | |
| 7 | |
| 8 | |
| 9 #------------ END OF SHELL SCRIPT ------------------------------------------ | |
| 10 EOF | |
| 11 | |
| 12 # run job 1 script | |
| 13 sh job-1-script.sh | |
| 14 | |
| 15 | |
| 16 #========== build and run job 2 script ============ | |
| 17 cat >job_2_script.sh <<EOF | |
| 18 #------------ BELOW IS WHERE YOU WRITE YOUR OWN SHELL SCRIPT -------------- | |
| 19 | |
| 20 | |
| 21 #------------ END OF SHELL SCRIPT ------------------------------------------ | |
| 22 EOF | |
| 23 | |
| 24 # run job 2 script | |
| 25 sh job_2_script.sh |
