annotate expose-outputs-to-galaxy-history.sh @ 2:ab8d558ea6e6 draft default tip

planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty

# change directory to tool outputs directory
cd ${REPORT_FILES_PATH}

# copy outputs from tool outputs directory to corresponding galaxy output path
if [ -e "rmarkdown_report.html" ]; then
  cp rmarkdown_report.html ${REPORT}
fi

if [ -e "index.html" ]; then
  cp index.html ${REPORT}
fi

if [ -e "padj-sorted-significant-genes.txt" ]; then
  cp padj-sorted-significant-genes.txt ${X_J}
fi