Mercurial > repos > mingchen0919 > aurora_deseq2_site
comparison index.Rmd @ 1:32210899a3dd draft
planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
author | mingchen0919 |
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date | Sun, 30 Dec 2018 12:45:56 -0500 |
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0:6f94b4b9de44 | 1:32210899a3dd |
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2 | |
3 ```{css, echo=FALSE} | |
4 pre code, pre, code { | |
5 white-space: pre !important; | |
6 overflow-x: scroll !important; | |
7 word-break: keep-all !important; | |
8 word-wrap: initial !important; | |
9 } | |
10 ``` | |
11 | |
12 ```{r, echo=FALSE} | |
13 # to make the css theme to work, <link></link> tags cannot be added directly | |
14 # as <script></script> tags as below. | |
15 # it has to be added using a code chunk with the htmltool functions!!! | |
16 css_link = tags$link() | |
17 css_link$attribs = list(rel="stylesheet", href="vakata-jstree-3.3.5/dist/themes/default/style.min.css") | |
18 css_link | |
19 ``` | |
20 | |
21 ```{r, eval=FALSE, echo=FALSE} | |
22 # this code chunk is purely for adding comments | |
23 # below is to add jQuery and jstree javascripts | |
24 ``` | |
25 | |
26 <script src="vakata-jstree-3.3.5/dist/jstree.min.js"></script> | |
27 | |
28 | |
29 ```{r, eval=FALSE, echo=FALSE} | |
30 # this code chunk is purely for adding comments | |
31 # javascript code below is to build the file tree interface | |
32 # see this for how to implement opening hyperlink: https://stackoverflow.com/questions/18611317/how-to-get-i-get-leaf-nodes-in-jstree-to-open-their-hyperlink-when-clicked-when | |
33 ``` | |
34 <script> | |
35 jQuery(function () { | |
36 // create an instance when the DOM is ready | |
37 jQuery('#jstree').jstree().bind("select_node.jstree", function (e, data) { | |
38 window.open( data.node.a_attr.href, data.node.a_attr.target ) | |
39 }); | |
40 }); | |
41 </script> | |
42 | |
43 ## Outputs | |
44 | |
45 ```{r, echo=FALSE} | |
46 # create a div container to store the file tree interface | |
47 library(htmltools) | |
48 tags$div( | |
49 id="jstree", | |
50 file_tree(Sys.getenv('REPORT_FILES_PATH')) | |
51 ) | |
52 ``` |