comparison DESeq_05.Rmd @ 0:6f94b4b9de44 draft

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author mingchen0919
date Tue, 27 Feb 2018 23:57:53 -0500
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1 ---
2 output: html_document
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4
5 ```{r setup, include=FALSE, warning=FALSE, message=FALSE}
6 knitr::opts_chunk$set(
7 echo = as.logical(opt$X_e),
8 error = TRUE
9 )
10 ```
11
12
13 # Differential expression analysis
14
15 ```{r}
16 dds <- DESeq(dds)
17 ```
18
19 ```{r echo=FALSE}
20 # save useful objects.
21 save(dds, rld, sample_table, sampleDists, zz, file=opt$X_w)
22 ```
23