Mercurial > repos > mingchen0919 > aurora_deseq2_site

comparison rmarkdown_report.xml @ 2:ab8d558ea6e6 draft default tip

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planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
author mingchen0919
date Sun, 30 Dec 2018 13:57:07 -0500
parents 32210899a3dd
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1:32210899a3dd 2:ab8d558ea6e6
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="1.15.0.6-0">pandoc</requirement> 6 <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
7 <requirement type="package" version="1.20.0">r-getopt</requirement> 7 <requirement type="package" version="1.20.0">r-getopt</requirement>
8 <requirement type="package" version="1.6">r-rmarkdown</requirement> 8 <requirement type="package" version="1.6">r-rmarkdown</requirement>
9 <requirement type="package" version="1.14.1">bioconductor-deseq2</requirement> 9 <requirement type="package" version="1.16.1">bioconductor-deseq2</requirement>
10 <requirement type="package" version="4.5.6">r-plotly</requirement> 10 <requirement type="package" version="4.5.6">r-plotly</requirement>
11 <requirement type="package" version="2.2.1">r-ggplot2</requirement> 11 <requirement type="package" version="2.2.1">r-ggplot2</requirement>
12 <requirement type="package" version="1.0.8">r-pheatmap</requirement> 12 <requirement type="package" version="1.0.8">r-pheatmap</requirement>
13 <requirement type="package" version="0.4">r-dt</requirement>
13 </requirements> 14 </requirements>
14 <command><![CDATA[ 15 <command><![CDATA[
15 16
16 ######### each aurora tool generates a html file and have an files path directory associated with it. 17 ######### each aurora tool generates a html file and have an files path directory associated with it.
17 mkdir -p $report.files_path && 18 mkdir -p $report.files_path &&