Mercurial > repos > mingchen0919 > aurora_deseq2_site

diff DESeq_results_03.Rmd @ 0:6f94b4b9de44 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload
author mingchen0919
date Tue, 27 Feb 2018 23:57:53 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DESeq_results_03.Rmd	Tue Feb 27 23:57:53 2018 -0500
@@ -0,0 +1,20 @@
+---
+output: html_document
+---
+
+```{r setup, include=FALSE, warning=FALSE, message=FALSE}
+knitr::opts_chunk$set(
+  echo = as.logical(opt$X_e),
+  error = TRUE
+)
+```
+
+
+# Histogram of p values
+
+```{r}
+hist(res$pvalue[res$baseMean > 1], breaks = 0:20/20,
+     col = "grey50", border = "white", main = "",
+     xlab = "Mean normalized count larger than 1")
+```
+