view DESeq_04.Rmd @ 0:6f94b4b9de44 draft

planemo upload

---
output: html_document
---

```{r setup, include=FALSE, warning=FALSE, message=FALSE}
knitr::opts_chunk$set(
  echo = as.logical(opt$X_e),
  error = TRUE
)
```



# Sample distance on variance stabilized data {.tabset}

## `rlog` Stabilizing transformation

```{r}
rld = rlog(dds, blind = FALSE)
datatable(head(assay(rld), 100), style="bootstrap", 
          class="table-condensed", options = list(dom = 'tp', scrollX = TRUE))
```

## Sample distance

```{r}
sampleDists <- dist(t(assay(rld)))
sampleDists
```