Mercurial > repos > mingchen0919 > aurora_deseq2_site
view DESeq_results_01.Rmd @ 0:6f94b4b9de44 draft
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author | mingchen0919 |
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date | Tue, 27 Feb 2018 23:57:53 -0500 |
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--- output: html_document --- ```{r setup, include=FALSE, warning=FALSE, message=FALSE} knitr::opts_chunk$set( echo = as.logical(opt$X_e), error = TRUE ) ``` ```{r eval=TRUE} # Import workspace # fcp = file.copy(opt$X_W, "deseq.RData") load(opt$X_W) ``` # Results {.tabset} ## Result table ```{r} cat('--- View the top 100 rows of the result table ---') res <- results(dds, contrast = c(opt$X_C, opt$X_T, opt$X_K)) write.csv(as.data.frame(res), file = opt$X_R) res_df = as.data.frame(res)[1:100, ] datatable(res_df, style="bootstrap", filter = 'top', class="table-condensed", options = list(dom = 'tp', scrollX = TRUE)) ```