Mercurial > repos > mingchen0919 > aurora_fastqc_site

annotate 11_kmer_content.Rmd @ 2:c64267b9f754 draft default tip

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planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
author mingchen0919
date Sun, 30 Dec 2018 12:48:14 -0500
parents b7c115edd970
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2 output: html_document
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3 ---
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5 ```{r setup, include=FALSE, warning=FALSE, message=FALSE}
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6 knitr::opts_knit$set(progress = FALSE)
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7 knitr::opts_chunk$set(error = TRUE, echo = FALSE)
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8 ```
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10 ### Kmer Content {.tabset}
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12 #### Before
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14 ```{r 'Kmer Content (before)', fig.width=10}
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15 kc_1 = extract_data_module(paste0(opt$X_d, '/read_1_fastqc/fastqc_data.txt'), 'Kmer Content')
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16 knitr::kable(kc_1)
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17 ```
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19 #### After
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20 ```{r 'Kmer Content (after)', fig.width=10}
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21 kc_2 = extract_data_module(paste0(opt$X_d, '/read_2_fastqc/fastqc_data.txt'), 'Kmer Content')
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22 knitr::kable(kc_2)
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23 ```
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