comparison 08_sequence_length_distribution.Rmd @ 2:c64267b9f754 draft default tip

planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty

1:92e3de11b9f8

---
output: html_document
---

```{r setup, include=FALSE, warning=FALSE, message=FALSE}
knitr::opts_chunk$set(
  echo = as.logical(opt$X_e),
  error = TRUE,
  eval = TRUE
)
```

# Sequence Length Distribution

```{r 'Sequence Length Distribution', fig.width=10}
## reads 1
sld_1 = extract_data_module(paste0(opt$X_d, '/read_1_fastqc/fastqc_data.txt'), 'Sequence Length Distribution')
sld_1$id = 1:length(sld_1$X.Length)

  geom_line(color = 'red') +
  scale_x_continuous(breaks = sld_2$id, labels = sld_2$X.Length) + 
  facet_grid(. ~ trim) +
  xlab('Sequence Length (bp)') +
  ylab('') + 
  theme(axis.text.x = element_text(angle=45))
ggplotly(p)
```

2:c64267b9f754

---
output: html_document
---

```{r setup, include=FALSE, warning=FALSE, message=FALSE}
knitr::opts_knit$set(progress = FALSE)
knitr::opts_chunk$set(error = TRUE, echo = FALSE)
```

### Sequence Length Distribution

```{r 'Sequence Length Distribution', fig.width=10}
## reads 1
sld_1 = extract_data_module(paste0(opt$X_d, '/read_1_fastqc/fastqc_data.txt'), 'Sequence Length Distribution')
sld_1$id = 1:length(sld_1$X.Length)

  geom_line(color = 'red') +
  scale_x_continuous(breaks = sld_2$id, labels = sld_2$X.Length) + 
  facet_grid(. ~ trim) +
  xlab('Sequence Length (bp)') +
  ylab('') + 
  theme(axis.text.x = element_text(size = 5),
        panel.background = element_rect(fill = NA),
        axis.line = element_line(), 
        plot.margin = margin(2,2,2,10) )
ggplotly(p)
```