view 11_kmer_content.Rmd @ 1:92e3de11b9f8 draft

remove fastqc_report.Rmd

---
output: html_document
---

```{r setup, include=FALSE, warning=FALSE, message=FALSE}
knitr::opts_chunk$set(
  echo = as.logical(opt$X_e),
  error = TRUE,
  eval = TRUE
)
```

# Kmer Content {.tabset}

## Before

```{r 'Kmer Content (before)', fig.width=10}
kc_1 = extract_data_module(paste0(opt$X_d, '/read_1_fastqc/fastqc_data.txt'), 'Kmer Content')
knitr::kable(kc_1)
```

## After
```{r 'Kmer Content (after)', fig.width=10}
kc_2 = extract_data_module(paste0(opt$X_d, '/read_2_fastqc/fastqc_data.txt'), 'Kmer Content')
knitr::kable(kc_2)
```