annotate expose-outputs-to-galaxy-history.sh @ 5:1148bc3d4e7b draft

planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty

# change directory to tool outputs directory
cd ${REPORT_FILES_PATH}

# copy outputs from tool outputs directory to corresponding galaxy output path
if [ -e "rmarkdown_report.html" ]; then
  cp rmarkdown_report.html ${REPORT}
fi

if [ -e "index.html" ]; then
  cp index.html ${REPORT}
fi

if [ -e "count_data.csv" ];then
  cp count_data.csv ${X_c}
fi