Mercurial > repos > mingchen0919 > aurora_htseq

comparison rmarkdown_report.xml @ 3:6a3bbafa24b3 draft

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planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
author mingchen0919
date Fri, 14 Dec 2018 09:16:39 -0500
parents fd547674f29f
children ab0aff96b9d1
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2:e08dd15646c6 3:6a3bbafa24b3
1 <tool name="aurora_htseq" id='aurora_htseq_report' version="2.0.2"> 1 <tool name="aurora_htseq" id='aurora_htseq_report' version="2.0.2">
2 <description> 2 <description>
3 counting reads in features 3 counting reads in features
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="2.5">pandoc</requirement> 6 <requirement type="package" version="2.2.3.2">pandoc</requirement>
7 <requirement type="package" version="1.20.2">r-getopt</requirement> 7 <requirement type="package" version="1.20.0">r-getopt</requirement>
8 <requirement type="package" version="1.10">r-rmarkdown</requirement> 8 <requirement type="package" version="1.5">r-rmarkdown</requirement>
9 <requirement type="package" version="0.11.0">htseq</requirement> 9 <requirement type="package" version="0.2">r-dt</requirement>
10 <requirement type="package" version="0.4">r-dt</requirement> 10 <requirement type="package" version="0.11.0">htseq</requirement>
11 </requirements> 11 </requirements>
12 <command><![CDATA[ 12 <command><![CDATA[
13 13
14 ######### each aurora tool generates a html file and have an files path directory associated with it. 14 ######### each aurora tool generates a html file and have an files path directory associated with it.
15 mkdir -p $report.files_path && 15 mkdir -p $report.files_path &&