comparison expose-outputs-to-galaxy-history.sh @ 0:0358f6f78adf draft

planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
author mingchen0919
date Fri, 14 Dec 2018 00:40:15 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:0358f6f78adf
1 # change directory to tool outputs directory
2 cd ${REPORT_FILES_PATH}
3
4 # copy outputs from tool outputs directory to corresponding galaxy output path
5 if [ -e "rmarkdown_report.html" ]; then
6 cp rmarkdown_report.html ${REPORT}
7 fi
8
9 if [ -e "index.html" ]; then
10 cp index.html ${REPORT}
11 fi
12
13
14 if [ -e trim-trimmed-pair1.fastq ]; then
15 cp trim-trimmed-pair1.fastq ${X_1}
16 fi
17
18 if [ -e trim-trimmed-pair2.fastq ]; then
19 cp trim-trimmed-pair2.fastq ${X_2}
20 fi
21
22 if [ -e trim-trimmed.fastq ]; then
23 cp trim-trimmed.fastq ${X_3}
24 fi