Mercurial > repos > mingchen0919 > aurora_star_site
comparison rmarkdown_report.xml @ 1:c8c0b708c221 draft
planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b-dirty
| author | mingchen0919 |
|---|---|
| date | Tue, 01 May 2018 11:07:53 -0400 |
| parents | c12e291895ff |
| children | 804fe260ee6c |
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| 0:c12e291895ff | 1:c8c0b708c221 |
|---|---|
| 1 <tool name="aurora_star_site" id='aurora_star_site_report' version="2.0.1"> | 1 <tool name="aurora_star_site" id='aurora_star_site_report' version="2.0.1"> |
| 2 <description> | 2 <description> |
| 3 some description | 3 ultrafast universal RNA-seq aligner |
| 4 </description> | 4 </description> |
| 5 <requirements> | 5 <requirements> |
| 6 <requirement type="package" version="1.15.0.6-0">pandoc</requirement> | 6 <requirement type="package" version="1.15.0.6-0">pandoc</requirement> |
| 7 <requirement type="package" version="1.20.0">r-getopt</requirement> | 7 <requirement type="package" version="1.20.0">r-getopt</requirement> |
| 8 <requirement type="package" version="1.6">r-rmarkdown</requirement> | 8 <requirement type="package" version="1.6">r-rmarkdown</requirement> |
| 37 -F '$first_reads' | 37 -F '$first_reads' |
| 38 -R '$second_reads' | 38 -R '$second_reads' |
| 39 -S '$sorted_bam' | 39 -S '$sorted_bam' |
| 40 | 40 |
| 41 ]]></command> | 41 ]]></command> |
| 42 <inputs> | |
| 43 <inputs> | 42 <inputs> |
| 44 <param type="data" name="first_reads" label="First reads" optional="False" format="fastq,fastqsanger"/> | 43 <param type="data" name="first_reads" label="First reads" optional="False" format="fastq,fastqsanger"/> |
| 45 <param type="data" name="second_reads" label="Second reads" optional="True" format="fastq,fastqsanger"/> | 44 <param type="data" name="second_reads" label="Second reads" optional="True" format="fastq,fastqsanger"/> |
| 46 <param type="data" name="genomeFastaFiles" argument="--genomeFastaFiles" label="Genome fasta files" | 45 <param type="data" name="genomeFastaFiles" argument="--genomeFastaFiles" label="Genome fasta files" |
| 47 optional="False" format="fasta,fa"/> | 46 optional="False" format="fasta,fa"/> |