# HG changeset patch
# User mingchen0919
# Date 1525187614 14400
# Node ID c04ef267c2c9055a710071661ea7ef8e0755ad6d
# Parent  c8c0b708c2211302d634dce5314adefd84475174
planemo upload commit 104ae24ee30761a0099eeb91362ed1e3e13aba4b-dirty

diff -r c8c0b708c221 -r c04ef267c2c9 01_index_genome.Rmd
--- a/01_index_genome.Rmd	Tue May 01 11:07:53 2018 -0400
+++ b/01_index_genome.Rmd	Tue May 01 11:13:34 2018 -0400
@@ -9,14 +9,11 @@
 knitr::opts_chunk$set(error = TRUE, echo = FALSE)
 ```
 
-## Job scripts
 
 ```{bash, echo=FALSE}
 sh ${TOOL_INSTALL_DIR}/build-and-run-job-scripts.sh
 ```
 
-### Index genome
-
 ```{r echo=FALSE,results='asis'}
 # display content of the job-script.sh file.
 cat('```bash\n')
diff -r c8c0b708c221 -r c04ef267c2c9 02_mapping.Rmd
--- a/02_mapping.Rmd	Tue May 01 11:07:53 2018 -0400
+++ b/02_mapping.Rmd	Tue May 01 11:13:34 2018 -0400
@@ -9,7 +9,6 @@
 knitr::opts_chunk$set(error = TRUE, echo = FALSE)
 ```
 
-### Mapping
 
 ```{r echo=FALSE,results='asis'}
 # display content of the job-script.sh file.
diff -r c8c0b708c221 -r c04ef267c2c9 03_sam_to_sorted_bam.Rmd
--- a/03_sam_to_sorted_bam.Rmd	Tue May 01 11:07:53 2018 -0400
+++ b/03_sam_to_sorted_bam.Rmd	Tue May 01 11:13:34 2018 -0400
@@ -9,7 +9,6 @@
 knitr::opts_chunk$set(error = TRUE, echo = FALSE)
 ```
 
-### SAM to sorted BAM
 
 ```{r echo=FALSE,warning=FALSE,results='asis'}
 # display content of the job-script.sh file.
diff -r c8c0b708c221 -r c04ef267c2c9 04_mapping_evaluation.Rmd
--- a/04_mapping_evaluation.Rmd	Tue May 01 11:07:53 2018 -0400
+++ b/04_mapping_evaluation.Rmd	Tue May 01 11:13:34 2018 -0400
@@ -9,7 +9,6 @@
 knitr::opts_chunk$set(error = TRUE, echo = FALSE)
 ```
 
-### Mapping evaluation
 
 ```{r echo=FALSE,warning=FALSE,results='asis'}
 # display content of the job-script.sh file.