comparison collection_list.xml @ 5:66022ba24ac7 draft

planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 51c9df9f3f883537269f8928f92052457b29f744-dirty

4:63e9500cdeec

                -t '${__tool_directory__}/collection_list.Rmd'
        ]]>
    </command>
    <inputs>
        <param type="data" name="file_list" multiple="true" />
        <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" />
        <param type="text" name="format" label="the format of input files (e.g., fastq, fastqsanger, fasta)"/>
    </inputs>
    <outputs>
        <data format="html" name="report" label="Collection builder report" />
        <collection type="list" name="list_collection">
            <discover_datasets pattern="__name_and_ext__" directory="files_directory" />
        </collection>
    </outputs>
</tool>

5:66022ba24ac7

                -t '${__tool_directory__}/collection_list.Rmd'
        ]]>
    </command>
    <inputs>
        <param type="data" name="file_list" multiple="true" />
        <param type="text" name="format" label="the format of input files (e.g., fastq, fastqsanger, fasta)"/>

        <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" />
    </inputs>
    <outputs>
        <data format="html" name="report" label="Collection builder (list collection)" />
        <collection type="list" name="list_collection">
            <discover_datasets pattern="__name_and_ext__" directory="files_directory" />
        </collection>
    </outputs>
</tool>