diff collection_list.Rmd @ 0:78018b735124 draft

planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit ec13349788ea42e106b5ba3fc1a5095ed755e644-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/collection_list.Rmd	Mon Sep 25 14:28:52 2017 -0400
@@ -0,0 +1,29 @@
+---
+title: 'Collection builder (collection type: list)'
+output:
+    html_document:
+      number_sections: true
+      toc: true
+      theme: cosmo
+      highlight: tango
+---
+
+```{r setup, include=FALSE, warning=FALSE, message=FALSE}
+knitr::opts_chunk$set(
+  echo = ECHO
+)
+```
+
+```{r}
+str(opt)
+```
+
+
+```{bash 'copy data to working directory', echo=FALSE}
+mkdir files_directory
+# Copy uploaded data to the working directory
+for f in $(echo FILE_LIST | sed "s/,/ /g")
+do
+    cp $f ./files_directory
+done
+```
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