Mercurial > repos > mingchen0919 > rmarkdown_deseq2_count_matrix
changeset 2:8ceda5896765 draft default tip
fix error
| author | mingchen0919 |
|---|---|
| date | Wed, 03 Jan 2018 15:04:30 -0500 |
| parents | 629323b5fc0c |
| children | |
| files | rmarkdown_deseq2_count_matrix.Rmd rmarkdown_deseq2_count_matrix.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/rmarkdown_deseq2_count_matrix.Rmd Sat Dec 30 16:39:39 2017 -0500 +++ b/rmarkdown_deseq2_count_matrix.Rmd Wed Jan 03 15:04:30 2018 -0500 @@ -50,7 +50,7 @@ The goal of this step is to rearrange the rows of the column data matrix so that the samples rows in the count data matrix and the sample columns in the count data matrix are in the same order. ```{r 'match sample names'} -col_data = col_data[col_names, ] +col_data = col_data[col_names, , drop = FALSE] datatable(col_data) ```
--- a/rmarkdown_deseq2_count_matrix.xml Sat Dec 30 16:39:39 2017 -0500 +++ b/rmarkdown_deseq2_count_matrix.xml Wed Jan 03 15:04:30 2018 -0500 @@ -35,7 +35,7 @@ <param type="text" name="count_matrix_column_names" label="column names" help="This field is used to update the column names of count data matrix. Column names are separated by comma (,). For example, 'column_1, column_2, column_3, column_4'" optional="True" area="True" size="5x25"></param> - <param type="data" name="col_data" label="column data (from file)" optional="False" format="txt,csv" multiple="False"/> + <param type="data" name="col_data" label="column data (from file)" optional="False" format="csv" multiple="False"/> <param type="text" name="design_formula" label="design formula" help="The simplest design formula for differential expression would be ~ condition, where condition is a column in colData(dds) that specifies which of two (or more groups) the samples belong to" optional="False" value="~ condition_1 + condition_2">