comparison fastqc_report.xml @ 5:3b275377dd27 draft

planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_report commit 9285c2b8ad41a486dde2a87600a6b8267841c8b5

4:3073b7bd0807

    <outputs>
        <data format="html" name="report" label="fastqc report" />
    </outputs>
    <citations>
        <citation type="bibtex">
            @unpublished{andrews_s,
                author = {Andrews, S.},
                keywords = {bioinformatics, ngs, qc},
                priority = {2},
                title = {{FastQC A Quality Control tool for High Throughput Sequence Data}},
                url = {http://www.bioinformatics.babraham.ac.uk/projects/fastqc/}
            }
        </citation>
        <citation type="bibtex">
            @article{allaire2016rmarkdown,
            title={rmarkdown: Dynamic Documents for R, 2016},

            journal={R package version 0.9},
            volume={6},
            year={2016}
            }
        </citation>
    </citations>
</tool>

5:3b275377dd27

    <outputs>
        <data format="html" name="report" label="fastqc report" />
    </outputs>
    <citations>
        <citation type="bibtex">
            @misc{bioinformatics2014fastqc,
            title={FastQC},
            author={Bioinformatics, Babraham},
            year={2014}
            }
        </citation>
        <citation type="bibtex">
            @article{allaire2016rmarkdown,
            title={rmarkdown: Dynamic Documents for R, 2016},

            journal={R package version 0.9},
            volume={6},
            year={2016}
            }
        </citation>
        <citation>
            @book{xie2015dynamic,
            title={Dynamic Documents with R and knitr},
            author={Xie, Yihui},
            volume={29},
            year={2015},
            publisher={CRC Press}
            }
        </citation>
        <citation>
            @misc{sievertplotly,
            title={plotly: Create Interactive Web Graphics via’plotly. js’. 2016. R package version 3.6. 0},
            author={Sievert, C and Parmer, C and Hocking, T and Chamberlain, S and Ram, K and Corvellec, M and Despouy, P}
            }
        </citation>
        <citation>
            @Manual{,
            title = {highcharter: A Wrapper for the 'Highcharts' Library},
            author = {Joshua Kunst},
            year = {2017},
            note = {R package version 0.5.0},
            url = {https://CRAN.R-project.org/package=highcharter},
            }
        </citation>
        <citation>
            @Manual{,
            title = {formattable: Create 'Formattable' Data Structures},
            author = {Kun Ren and Kenton Russell},
            year = {2016},
            note = {R package version 0.2.0.1},
            url = {https://CRAN.R-project.org/package=formattable},
            }
        </citation>
    </citations>
</tool>