Mercurial > repos > mingchen0919 > rmarkdown_fastqc_report
comparison fastqc_report.xml @ 18:8635a4cee6dd draft
add boxplot for per base sequence quality
| author | mingchen0919 |
|---|---|
| date | Thu, 09 Nov 2017 09:22:09 -0500 |
| parents | 1710b0e874f1 |
| children | 8c79e5b7cfc0 |
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| 17:ac5c618e4d97 | 18:8635a4cee6dd |
|---|---|
| 3 Evaluate short reads with FastQC software on a single reads file or a paired of untrimmed and trimmed reads | 3 Evaluate short reads with FastQC software on a single reads file or a paired of untrimmed and trimmed reads |
| 4 files. | 4 files. |
| 5 </description> | 5 </description> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="1.15.0.6-0">pandoc</requirement> | 7 <requirement type="package" version="1.15.0.6-0">pandoc</requirement> |
| 8 <requirement type="package" version="1.14.1">bioconductor-deseq2</requirement> | |
| 9 <requirement type="package" version="1.20.0">r-getopt</requirement> | 8 <requirement type="package" version="1.20.0">r-getopt</requirement> |
| 10 <requirement type="package" version="1.3">r-rmarkdown</requirement> | 9 <requirement type="package" version="1.3">r-rmarkdown</requirement> |
| 11 <requirement type="package" version="1.8.4">r-plyr</requirement> | 10 <requirement type="package" version="1.8.4">r-plyr</requirement> |
| 12 <requirement type="package" version="1.1.0">r-stringr</requirement> | 11 <requirement type="package" version="1.1.0">r-stringr</requirement> |
| 13 <requirement type="package" version="0.5.0">r-highcharter</requirement> | |
| 14 <requirement type="package" version="0.2">r-dt</requirement> | 12 <requirement type="package" version="0.2">r-dt</requirement> |
| 15 <requirement type="package" version="1.4.2">r-reshape2</requirement> | 13 <requirement type="package" version="1.4.2">r-reshape2</requirement> |
| 16 <requirement type="package" version="4.5.6">r-plotly</requirement> | 14 <requirement type="package" version="4.5.6">r-plotly</requirement> |
| 17 <requirement type="package" version="0.2.0.1">r-formattable</requirement> | |
| 18 <requirement type="package" version="0.3.5">r-htmltools</requirement> | 15 <requirement type="package" version="0.3.5">r-htmltools</requirement> |
| 19 <requirement type="package" version="0.11.5">fastqc</requirement> | 16 <requirement type="package" version="0.11.5">fastqc</requirement> |
| 20 </requirements> | 17 </requirements> |
| 21 <stdio> | 18 <stdio> |
| 22 <!--redirecting stderr to a file. "XXX" is used to match with nothing so that tool running won't be interrupted during testing--> | 19 <!--redirecting stderr to a file. "XXX" is used to match with nothing so that tool running won't be interrupted during testing--> |