Mercurial > repos > mingchen0919 > rmarkdown_fastqc_report
comparison fastqc_report.xml @ 13:9d3586701985 draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_report
| author | mingchen0919 |
|---|---|
| date | Mon, 16 Oct 2017 21:33:31 -0400 |
| parents | 3d317469c69c |
| children | 2efa46ce2c4c |
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| 12:3d317469c69c | 13:9d3586701985 |
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| 1 <tool id="fastqc_report" name="Fastqc report" version="1.0.0"> | 1 <tool id="fastqc_report" name="Fastqc report" version="1.0.1"> |
| 2 <description> | 2 <description> |
| 3 Implements FastQC analysis and display results in R Markdown html. | 3 Implements FastQC analysis and display results in R Markdown html. |
| 4 </description> | 4 </description> |
| 5 <requirements> | 5 <requirements> |
| 6 <requirement type="package" version="1.15.0.6-0">pandoc</requirement> | 6 <requirement type="package" version="1.15.0.6-0">pandoc</requirement> |
| 43 -e $echo | 43 -e $echo |
| 44 | 44 |
| 45 ]]> | 45 ]]> |
| 46 </command> | 46 </command> |
| 47 <inputs> | 47 <inputs> |
| 48 <param format="fastq,fastq.gz,fastq.bz2,bam,sam" multiple="true" name="reads" type="data" label="Short reads data from history" /> | 48 <param format="fastq,fastq.gz,fastq.bz2,bam,sam" name="reads" type="data" label="Short reads data from history" /> |
| 49 <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" /> | 49 <param type="boolean" name="echo" truevalue="TRUE" falsevalue="FALSE" checked="false" label="Display analysis code in report?" /> |
| 50 </inputs> | 50 </inputs> |
| 51 <outputs> | 51 <outputs> |
| 52 <data format="html" name="report" label="fastqc report" /> | 52 <data format="html" name="report" label="fastqc report" /> |
| 53 </outputs> | 53 </outputs> |