Mercurial > repos > mingchen0919 > rmarkdown_fastqc_report
comparison fastqc_report_render.R @ 19:8c79e5b7cfc0 draft default tip
add boxplot for per base sequence quality
author | mingchen0919 |
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date | Thu, 09 Nov 2017 09:49:46 -0500 |
parents | 1710b0e874f1 |
children |
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18:8635a4cee6dd | 19:8c79e5b7cfc0 |
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2 library(rmarkdown) | 2 library(rmarkdown) |
3 library(htmltools) | 3 library(htmltools) |
4 library(plyr) | 4 library(plyr) |
5 library(dplyr) | 5 library(dplyr) |
6 library(stringr) | 6 library(stringr) |
7 library(highcharter) | |
8 library(DT) | 7 library(DT) |
9 library(reshape2) | 8 library(reshape2) |
10 library(plotly) | 9 library(plotly) |
11 library(formattable) | |
12 options(stringsAsFactors=FALSE, useFancyQuotes=FALSE) | 10 options(stringsAsFactors=FALSE, useFancyQuotes=FALSE) |
13 | 11 |
14 ##============ Sink warnings and errors to a file ============== | 12 ##============ Sink warnings and errors to a file ============== |
15 ## use the sink() function to wrap all code within it. | 13 ## use the sink() function to wrap all code within it. |
16 ##============================================================== | 14 ##============================================================== |