comparison fastqc_report_render.R @ 19:8c79e5b7cfc0 draft default tip

add boxplot for per base sequence quality
author mingchen0919
date Thu, 09 Nov 2017 09:49:46 -0500
parents 1710b0e874f1
children
comparison
equal deleted inserted replaced
18:8635a4cee6dd 19:8c79e5b7cfc0
2 library(rmarkdown) 2 library(rmarkdown)
3 library(htmltools) 3 library(htmltools)
4 library(plyr) 4 library(plyr)
5 library(dplyr) 5 library(dplyr)
6 library(stringr) 6 library(stringr)
7 library(highcharter)
8 library(DT) 7 library(DT)
9 library(reshape2) 8 library(reshape2)
10 library(plotly) 9 library(plotly)
11 library(formattable)
12 options(stringsAsFactors=FALSE, useFancyQuotes=FALSE) 10 options(stringsAsFactors=FALSE, useFancyQuotes=FALSE)
13 11
14 ##============ Sink warnings and errors to a file ============== 12 ##============ Sink warnings and errors to a file ==============
15 ## use the sink() function to wrap all code within it. 13 ## use the sink() function to wrap all code within it.
16 ##============================================================== 14 ##==============================================================