Mercurial > repos > mingchen0919 > rmarkdown_fastqc_site

comparison 02_per_base_sequence_quality.Rmd @ 14:a6bf4dfca096 draft

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remove unnecessary dependencies
author mingchen0919
date Thu, 09 Nov 2017 09:32:42 -0500
parents 68ea2ebbf866
children
comparison
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13:6faa68239cd7 14:a6bf4dfca096
43 geom_line(mapping = aes(x = id, y = Mean, color = "red")) + 43 geom_line(mapping = aes(x = id, y = Mean, color = "red")) +
44 scale_x_continuous(breaks = pbsq_2$id, labels = pbsq_2$X.Base) + 44 scale_x_continuous(breaks = pbsq_2$id, labels = pbsq_2$X.Base) +
45 scale_fill_identity() + 45 scale_fill_identity() +
46 scale_color_identity() + 46 scale_color_identity() +
47 ylim(0, max(comb_pbsq$Upper.Quartile) + 5) + 47 ylim(0, max(comb_pbsq$Upper.Quartile) + 5) +
48 xlab('Position in read (bp)') +
48 facet_grid(. ~ trim) + 49 facet_grid(. ~ trim) +
49 theme(axis.text.x = element_text(angle=45)) 50 theme(axis.text.x = element_text(angle=45))
50 p 51 p
51 52
52 ``` 53 ```