Mercurial > repos > mingchen0919 > rmarkdown_fastqc_site

view 02_fastqc_original_reports.Rmd @ 3:54a93db1a101 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit 9285c2b8ad41a486dde2a87600a6b8267841c8b5-dirty
author mingchen0919
date Tue, 08 Aug 2017 11:29:56 -0400
parents d732d4526c6d
children
line wrap: on
line source

---
title: "FastQC original reports"
output: html_document
---

```{r 'FastQC original reports', include=FALSE, warning=FALSE, message=FALSE}
knitr::opts_chunk$set(echo = ECHO)
```


Below are links to ***Fastqc*** original html reports.

```{r 'html report links'}
html_report_list = list()
html_files = list.files('REPORT_OUTPUT_DIR', pattern = '.*html')
for (i in html_files) {
  html_report_list[[i]] = tags$li(tags$a(href=i, i))
}
tags$ul(html_report_list)
```