view 11_kmer_content.Rmd @ 12:68ea2ebbf866 draft

add boxplot for per base sequence quality

---
title: 'Kmer Content'
output:
    html_document:
      number_sections: true
      toc: true
      theme: cosmo
      highlight: tango
---

```{r setup, include=FALSE, warning=FALSE, message=FALSE}
knitr::opts_chunk$set(
  echo = ECHO,
  error = TRUE
)
```

### Kmer Content {.tabset}

#### Before

```{r 'Kmer Content (before)', fig.width=10}
kc_1 = extract_data_module('REPORT_DIR/reads_1_fastqc_data.txt', 'Kmer Content')
knitr::kable(kc_1)
```

#### After
```{r 'Kmer Content (after)', fig.width=10}
kc_2 = extract_data_module('REPORT_DIR/reads_2_fastqc_data.txt', 'Kmer Content')
knitr::kable(kc_2)
```