Mercurial > repos > mingchen0919 > rmarkdown_i_adhore
comparison i_adhore_configure.Rmd @ 7:f86be5aeea36 draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_i_adhore commit cc2f473d151c0de971c760a9aec9d09ff073ad85-dirty
author | mingchen0919 |
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date | Fri, 25 Aug 2017 12:04:15 -0400 |
parents | 8cf3b1298508 |
children | fcd72af3f41e |
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6:8cf3b1298508 | 7:f86be5aeea36 |
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78 fileConn = file('I_ADHORE_CONFIGURE_TXT') | 78 fileConn = file('I_ADHORE_CONFIGURE_TXT') |
79 writeLines(lines, con = fileConn) | 79 writeLines(lines, con = fileConn) |
80 ``` | 80 ``` |
81 | 81 |
82 | 82 |
83 # I-ADHoRe analysis results | |
84 | |
85 ```{bash} | |
86 # run i-adhore analysis | |
87 i-adhore I_ADHORE_CONFIGURE_TXT | |
88 ``` | |
89 | |
90 Links to outputs | |
91 | |
92 ```{r} | |
93 output_path | |
94 | |
95 outputs_list = list() | |
96 i_adhore_outputs = list.files(output_path) | |
97 for (i in i_adhore_outputs) { | |
98 outputs_list[[i]] = tags$li(tags$a(href=i, i)) | |
99 } | |
100 tags$ul(outputs_list) | |
101 ``` | |
102 | |
103 | |
104 |