# HG changeset patch # User mingchen0919 # Date 1502825890 14400 # Node ID 8cf3b12985089b2d0c39a778d295cc663a155c24 # Parent dab02b629d48ebd5af5b75d1bd7e83906a93f442 planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_i_adhore commit 60ea96204588be4348bd5d7879d1eb0d73f487c7-dirty diff -r dab02b629d48 -r 8cf3b1298508 i_adhore_configure.Rmd --- a/i_adhore_configure.Rmd Tue Aug 15 15:35:23 2017 -0400 +++ b/i_adhore_configure.Rmd Tue Aug 15 15:38:10 2017 -0400 @@ -47,9 +47,8 @@ # Other parameters ```{r} -data_dir = gsub('dataset_.*dat', '', opt$blast_table) output_dir = tail(strsplit(opt$i_adhore_configure_dir, '/')[[1]], 1) -output_path = paste(data_dir, output_dir, sep = '') +output_path = gsub('dataset_.*dat', output_dir, opt$blast_table) params = c( 'blast_table' = opt$blast_table,