Mercurial > repos > mingchen0919 > rmarkdown_i_adhore
changeset 9:2b33a6d5211d draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_i_adhore commit a204fdb1b6f8a3859f8aefefe367b6a9deb6811d-dirty
| author | mingchen0919 |
|---|---|
| date | Fri, 25 Aug 2017 14:47:41 -0400 |
| parents | f8bedb407e5c |
| children | 68186432ee9a |
| files | i-adhore.xml |
| diffstat | 1 files changed, 20 insertions(+), 0 deletions(-) [+] |
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--- a/i-adhore.xml Fri Aug 25 13:00:41 2017 -0400 +++ b/i-adhore.xml Fri Aug 25 14:47:41 2017 -0400 @@ -76,7 +76,27 @@ <data name="i_adhore_configure" format="html" label="i-adhore configure report" /> <data name="i_adhore_configure_txt" format="txt" label="i-adhore configure file" /> </outputs> + <help> + This tool is a wrapper of the i-ADHoRe sofeware. To use this tool, you will need to have i-ADHoRe installed. + This tool automatically detects genomic regions with statistically significant conserved gene content and order. + Therefore, this tool can be used for analyses within one genome (to look for paralogous regions with duplicated + genes) or for comparisons between genomes of different organisms (to look for colinearity). The algorithm was + especially designed to cope with micro-rearrangements (events frequently observed within different plant + lineages), since these greatly complicate the search for colinear regions. + </help> <citations> + <citation> + @article{proost2011adhore, + title={i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets}, + author={Proost, Sebastian and Fostier, Jan and De Witte, Dieter and Dhoedt, Bart and Demeester, Piet and Van de Peer, Yves and Vandepoele, Klaas}, + journal={Nucleic acids research}, + volume={40}, + number={2}, + pages={e11--e11}, + year={2011}, + publisher={Oxford University Press} + } + </citation> <citation type="bibtex"> @article{allaire2016rmarkdown, title={rmarkdown: Dynamic Documents for R, 2016},